Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra002470.1-P | Field mustard | cytosol, nucleus, plasma membrane | 70.65 | 72.71 |
| CDY09194 | Canola | cytosol, peroxisome, plasma membrane | 70.45 | 72.65 |
| Bra020240.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 68.62 | 68.9 |
| CDY67417 | Canola | endoplasmic reticulum, plasma membrane | 61.74 | 59.69 |
| CDY31533 | Canola | cytosol, nucleus, plasma membrane | 57.29 | 56.83 |
| VIT_06s0004g02930.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 23.89 | 23.79 |
| KRH22901 | Soybean | cytosol | 18.83 | 19.66 |
| TraesCS2B01G051700.1 | Wheat | cytosol, peroxisome, plasma membrane | 10.53 | 10.53 |
| HORVU2Hr1G005630.19 | Barley | mitochondrion | 10.53 | 9.2 |
| TraesCS2A01G039300.2 | Wheat | cytosol, peroxisome, plasma membrane | 9.31 | 9.09 |
| AT5G03180.2 | Thale cress | nucleus | 6.28 | 6.65 |
| AT3G09760.1 | Thale cress | nucleus | 4.45 | 4.48 |
| AT3G06330.1 | Thale cress | cytosol | 3.64 | 4.23 |
| AT5G18760.1 | Thale cress | plastid | 2.83 | 3.41 |
Protein Annotations
| MapMan:19.2.2.1.5.3.4 | Gene3D:3.30.40.10 | EntrezGene:836179 | ProteinID:AED97348.1 | ProteinID:AED97350.1 | ArrayExpress:AT5G60580 |
| EnsemblPlantsGene:AT5G60580 | RefSeq:AT5G60580 | TAIR:AT5G60580 | RefSeq:AT5G60580-TAIR-G | EnsemblPlants:AT5G60580.4 | TAIR:AT5G60580.4 |
| UniProt:F4K0E2 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0008150 | GO:GO:0008270 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0046872 | InterPro:IPR011016 | InterPro:IPR013083 | InterPro:MARCH-like |
| RefSeq:NP_001032112.1 | RefSeq:NP_851232.1 | PFAM:PF12906 | PO:PO:0000293 | PFscan:PS51292 | PANTHER:PTHR23012 |
| PANTHER:PTHR23012:SF25 | SMART:SM00744 | SUPFAM:SSF57850 | TMHMM:TMhelix | UniParc:UPI0000197130 | InterPro:Znf_RING-CH |
| InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : | : | : |
Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4K0E2]
Coordinates
chr5:+:24353675..24356974
Molecular Weight (calculated)
53679.6 Da
IEP (calculated)
8.538
GRAVY (calculated)
-0.129
Length
494 amino acids
Sequence
(BLAST)
(BLAST)
001: MATEEKPLNS LDLSHDDSSP ASNQAEGSSA ITEDTSANVQ QWRRKNLSLQ IPSRAAGLSP EDSVVIKMPP TPSPTPRRVN FALTSSSPGP TPTSSSVLPR
101: GKSSLKNLLP KAGCKPKTSN TDIEKGQGNA CSPPASQEKA SISRSLSLSK LFTPRIKRTS SLPVTPVILS NSESAHGGTS VAPQTPNRKG SVHIARSRSV
201: PLNDKELSLK GMDSFFRVIP STPRVKEGDV FSNASEAGNT ETGDADGEDI PEDEAVCRIC LVELCEGGET LKMECSCKGE LALAHKDCAL KWFTIKGNKT
301: CEVCKQEVKN LPVTLLRIQS LRNSGVPQLD VSGYRVWQEV PVLVIISMLA YFCFLEQLLV ENMGTGAIAI SLPFSCILGL LASMTASTMV LEYSYAVMRR
401: FVWIYASVQF ALVVLFAHIF YSVVKLQPVL SVLLSTFAGF GVCICGSSVM VEFVRWRRRW RARRLEQQLN HALTLSQPPQ PLDPTTSLHH SNTS
101: GKSSLKNLLP KAGCKPKTSN TDIEKGQGNA CSPPASQEKA SISRSLSLSK LFTPRIKRTS SLPVTPVILS NSESAHGGTS VAPQTPNRKG SVHIARSRSV
201: PLNDKELSLK GMDSFFRVIP STPRVKEGDV FSNASEAGNT ETGDADGEDI PEDEAVCRIC LVELCEGGET LKMECSCKGE LALAHKDCAL KWFTIKGNKT
301: CEVCKQEVKN LPVTLLRIQS LRNSGVPQLD VSGYRVWQEV PVLVIISMLA YFCFLEQLLV ENMGTGAIAI SLPFSCILGL LASMTASTMV LEYSYAVMRR
401: FVWIYASVQF ALVVLFAHIF YSVVKLQPVL SVLLSTFAGF GVCICGSSVM VEFVRWRRRW RARRLEQQLN HALTLSQPPQ PLDPTTSLHH SNTS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.