CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

nucleus 1
cytosol 1
mitochondrion 1
plasma membrane 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plasma membrane
Any Predictor:	cytosol, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra020240.1-P	Field mustard	cytosol, peroxisome, plasma membrane	94.78	92.28
AT5G60580.4	Thale cress	cytosol, nucleus, peroxisome	72.65	70.45
CDY67417	Canola	endoplasmic reticulum, plasma membrane	70.56	66.14
CDY31533	Canola	cytosol, nucleus, plasma membrane	63.47	61.04
VIT_06s0004g02930.t01	Wine grape	cytosol, peroxisome, plasma membrane	28.6	27.62
KRH22901	Soybean	cytosol	21.5	21.78
TraesCS2B01G051700.1	Wheat	cytosol, peroxisome, plasma membrane	10.02	9.72
TraesCS2A01G039300.2	Wheat	cytosol, peroxisome, plasma membrane	9.19	8.7
CDY41589	Canola	nucleus	7.93	8.35
HORVU2Hr1G005630.19	Barley	mitochondrion	9.6	8.14
CDY10383	Canola	cytosol, mitochondrion, peroxisome, plasma membrane	3.13	5.17
CDY41588	Canola	nucleus	5.01	4.97
CDY18852	Canola	cytosol	4.38	4.85
CDY69891	Canola	plasma membrane	1.88	4.84
CDY44728	Canola	cytosol, nucleus, plasma membrane	4.59	4.69
CDY44727	Canola	cytosol	3.13	4.12
CDY10402	Canola	mitochondrion	3.13	4.05
CDY05254	Canola	cytosol	3.76	4.04
CDY07939	Canola	cytosol, nucleus, plasma membrane	3.76	4.0
CDX73994	Canola	cytosol	3.76	3.77
CDY62901	Canola	cytosol	2.92	3.34
CDX70311	Canola	cytosol	2.09	3.26
CDY24702	Canola	cytosol	2.92	3.17
CDY44346	Canola	cytosol	2.71	3.12
CDY02603	Canola	cytosol, peroxisome, plasma membrane	2.51	3.11
CDX74109	Canola	cytosol, peroxisome, plasma membrane	2.51	2.75
CDY47182	Canola	cytosol	2.09	2.56
CDY08057	Canola	cytosol, peroxisome, plasma membrane	2.09	2.29

Protein Annotations

KEGG:00220+6.3.2.-	KEGG:00261+6.3.2.-	KEGG:00380+6.3.2.-	MapMan:19.2.2.1.5.3.4	Gene3D:3.30.40.10	GO:A0A078F836
UniProt:A0A078F836	EnsemblPlants:CDY09194	ProteinID:CDY09194	ProteinID:CDY09194.1	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0008270	GO:GO:0016020	GO:GO:0016021	GO:GO:0046872	EnsemblPlantsGene:GSBRNA2T00001437001
InterPro:IPR011016	InterPro:IPR013083	InterPro:MARCH-like	PFAM:PF12906	PFscan:PS51292	PANTHER:PTHR23012
PANTHER:PTHR23012:SF25	SMART:SM00744	SUPFAM:SSF57850	TMHMM:TMhelix	UniPathway:UPA00143	UniParc:UPI0004EEFB81
InterPro:Znf_RING-CH	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

BnaA02g06200DBnaA02g06200D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F836]

Coordinates

chrLK031993:-:673773..677166

Molecular Weight (calculated)

52240.8 Da

IEP (calculated)

8.710

GRAVY (calculated)

-0.132

Length

479 amino acids

Sequence
(BLAST)

001: MATEEKPLDS THGDFATSSN QAEGSYAITE GTSTNVQQWR RKNLSLQIPS RTTGLSPEDS VVIKMPPTPS PTPRRVNFSL TSTSPGPGPT SSNVPPRGKS
101: SLKNLIPKAG FKPKTSHTDI EKGQGDVVYS PSALQEKASI SRSLSLSKLF TPRIKRTSSL PVTPIVLSKS ESAHGGSSAA PHTPSSKGRV QIARSLSVPV
201: NDKEASLRRM DSFFRVIPST PRVKEGDVFS NASEAGNTET CEADGEDIPE EEAVCRICLV DLCEGGETLK MECSCKGELA LAHKDCALKW FTIKGNKTCE
301: VCKQEVKNLP VTLLRIQSIR NSGVPQIDVT GYRVWQEVPV LVIISMLAYF CFLEQLLVEK MGTSAIAISL PFSCILGLLA SMTASTMVMR RFVWIYASVQ
401: FALVVLFAHV FYSVVELQPV LSVLLSTFAG FGVCICGSSV MVEFVRWKRR WRARSLDQQQ LNHAQTLDAT TSQHHPNAS

Best Arabidopsis Sequence Match ( AT5G60580.3 )
(BLAST)

001: MATEEKPLNS LDLSHDDSSP ASNQAEGSSA ITEDTSANVQ QWRRKNLSLQ IPSRAAGLSP EDSVVIKMPP TPSPTPRRVN FALTSSSPGP TPTSSSVLPR
101: GKSSLKNLLP KAGCKPKTSN TDIEKGQGNA CSPPASQEKA SISRSLSLSK LFTPRIKRTS SLPVTPVILS NSESAHGGTS VAPQTPNRKG SVHIARSRSV
201: PLNDKELSLK GMDSFFRVIP STPRVKEGDV FSNASEAGNT ETGDADGEDI PEDEAVCRIC LVELCEGGET LKMECSCKGE LALAHKDCAL KWFTIKGNKT
301: CEVCKQEVKN LPVTLLRIQS LRNSGVPQLD VSGYRVWQEV PVLVIISMLA YFCFLEQLLV ENMGTGAIAI SLPFSCILGL LASMTASTMV MRRFVWIYAS
401: VQFALVVLFA HIFYSVVKLQ PVLSVLLSTF AGFGVCICGS SVMVEFVRWR RRWRARRLEQ QLNHALTLSQ PPQPLDPTTS LHHSNTS

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4K0E2]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.