Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT3G06330.1 | Thale cress | cytosol | 54.83 | 57.28 |
| CDY18852 | Canola | cytosol | 53.71 | 55.2 |
| Bra020758.1-P | Field mustard | cytosol | 42.92 | 43.12 |
| CDY24702 | Canola | cytosol | 42.02 | 42.31 |
| CDX74109 | Canola | cytosol, peroxisome, plasma membrane | 34.16 | 34.78 |
| CDY08057 | Canola | cytosol, peroxisome, plasma membrane | 33.71 | 34.32 |
| CDY02603 | Canola | cytosol, peroxisome, plasma membrane | 8.99 | 10.36 |
| CDY47182 | Canola | cytosol | 8.31 | 9.46 |
| CDY44727 | Canola | cytosol | 3.6 | 4.4 |
| HORVU6Hr1G001690.9 | Barley | cytosol, nucleus | 4.27 | 4.13 |
| CDY67417 | Canola | endoplasmic reticulum, plasma membrane | 4.49 | 3.91 |
| CDX70311 | Canola | cytosol | 2.7 | 3.91 |
| Solyc09g007680.2.1 | Tomato | cytosol, nucleus, plasma membrane | 4.49 | 3.86 |
| CDY31533 | Canola | cytosol, nucleus, plasma membrane | 4.27 | 3.82 |
| CDY07939 | Canola | cytosol, nucleus, plasma membrane | 3.82 | 3.78 |
| CDY09194 | Canola | cytosol, peroxisome, plasma membrane | 4.04 | 3.76 |
| CDY41589 | Canola | nucleus | 3.82 | 3.74 |
| TraesCS6D01G005100.1 | Wheat | plasma membrane | 3.82 | 3.64 |
| TraesCS6A01G001000.1 | Wheat | cytosol, nucleus, plasma membrane | 3.37 | 3.41 |
| PGSC0003DMT400004459 | Potato | cytosol, nucleus, plasma membrane | 3.82 | 3.29 |
| CDY69891 | Canola | plasma membrane | 1.35 | 3.23 |
| CDX73994 | Canola | cytosol | 3.37 | 3.14 |
| CDY44346 | Canola | cytosol | 2.92 | 3.12 |
| CDY44728 | Canola | cytosol, nucleus, plasma membrane | 3.15 | 2.99 |
| CDY10402 | Canola | mitochondrion | 2.47 | 2.97 |
| CDY41588 | Canola | nucleus | 3.15 | 2.9 |
| CDY62901 | Canola | cytosol | 2.47 | 2.63 |
| CDY10383 | Canola | cytosol, mitochondrion, peroxisome, plasma membrane | 1.57 | 2.41 |
| KRG90054 | Soybean | cytosol, peroxisome, vacuole | 2.47 | 2.32 |
| VIT_12s0034g00630.t01 | Wine grape | cytosol, nucleus | 0.0 | 0.0 |
Protein Annotations
| KEGG:00220+6.3.2.- | KEGG:00261+6.3.2.- | KEGG:00380+6.3.2.- | MapMan:19.2.2.1.5.3.4 | Gene3D:3.30.40.10 | GO:A0A078EXC9 |
| EnsemblPlants:CDY05254 | ProteinID:CDY05254 | ProteinID:CDY05254.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0008270 |
| EnsemblPlantsGene:GSBRNA2T00120074001 | InterPro:IPR011016 | InterPro:IPR013083 | InterPro:MARCH-like | PFAM:PF12906 | PFscan:PS51292 |
| PANTHER:PTHR23012 | PANTHER:PTHR23012:SF84 | SMART:SM00744 | SUPFAM:SSF57850 | TMHMM:TMhelix | UniPathway:UPA00143 |
| UniParc:UPI0004EEBC85 | InterPro:Znf_RING-CH | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : |
Description
BnaC05g45490D
Coordinates
chrLK031960:+:623957..626946
Molecular Weight (calculated)
48804.8 Da
IEP (calculated)
7.828
GRAVY (calculated)
-0.118
Length
445 amino acids
Sequence
(BLAST)
(BLAST)
001: MMMKQEESAA EQPEIAIIVA DSSPPLPPHS PPSQVKEKST EEDVQSCSQP SGTHSDLSIQ IPPRPIPFVG GSRIPKGSLK STSSFKSGGT TSSPSPRGIL
101: RNLSLKKKVV THPESERSSL LSPGLMEEGA AKKANASATS PYWQRCLSLP SRQPAKLSPV VPPQVSAAVP GEPPKKDSMH PPVPRSLSMP GRNKVIVRSI
201: SFDNRKAHVA SETSADQISP VPTEETEEEI PEEEAVCRIC LDECEEGNTL KMECSCKGDL RLVHEACAIK WFSTKGTRTC DVCRQEVRNL PVILLRVPTS
301: NQLNSRRDRS QQNLQSQTAS AWQEFVVLVL ISTVCYFFFL EQLLIRDLNT QAIYIAGPFS LTLGLLASVF AIVLAIREYI WTYAALEFAL VGMLVHLLYS
401: TVRLPAIYSI LFAGILGFGI AVCLNSLYLN YFAWRARVAE NSNPV
101: RNLSLKKKVV THPESERSSL LSPGLMEEGA AKKANASATS PYWQRCLSLP SRQPAKLSPV VPPQVSAAVP GEPPKKDSMH PPVPRSLSMP GRNKVIVRSI
201: SFDNRKAHVA SETSADQISP VPTEETEEEI PEEEAVCRIC LDECEEGNTL KMECSCKGDL RLVHEACAIK WFSTKGTRTC DVCRQEVRNL PVILLRVPTS
301: NQLNSRRDRS QQNLQSQTAS AWQEFVVLVL ISTVCYFFFL EQLLIRDLNT QAIYIAGPFS LTLGLLASVF AIVLAIREYI WTYAALEFAL VGMLVHLLYS
401: TVRLPAIYSI LFAGILGFGI AVCLNSLYLN YFAWRARVAE NSNPV
001: MKMQDSAAQE PEIAIIVGDS SSSSLHSSSQ VTEKSTEDVP SCSHLDLSIQ IPSRSLPFGN GRNPKGSLKS TPSFKSGTTS SPRGILRNLS LKKKVISQPE
101: SERSSLLSPG LMETAKKPNA TGSTTSPYWK RCLSLPSRQA AKLSPVVSTQ LSAGVPGDPP NKDYSRSLSM PGRNKVIVRS ISFDNHKARV SSETSADQVS
201: SVPPEETDEE IPEEEAVCRI CLDVCEEGNT LKMECSCKGD LRLVHEACAM KWFSTKGTRT CDVCRQVVQN LPVTLVRVPT PNQQNNRRGS SQQNMPSQTV
301: SAWQEFVVLV LISTVCYFFF LEQLLIRDLN KQAIYIAAPF SLTLGLLASI FAIVLAIREY IWTYAALEFA LVGMLVHIFY ATVRLSATYS ILFAGILGFG
401: IAVCLNSLYL HYFAWRVRVA QNSSPV
101: SERSSLLSPG LMETAKKPNA TGSTTSPYWK RCLSLPSRQA AKLSPVVSTQ LSAGVPGDPP NKDYSRSLSM PGRNKVIVRS ISFDNHKARV SSETSADQVS
201: SVPPEETDEE IPEEEAVCRI CLDVCEEGNT LKMECSCKGD LRLVHEACAM KWFSTKGTRT CDVCRQVVQN LPVTLVRVPT PNQQNNRRGS SQQNMPSQTV
301: SAWQEFVVLV LISTVCYFFF LEQLLIRDLN KQAIYIAAPF SLTLGLLASI FAIVLAIREY IWTYAALEFA LVGMLVHIFY ATVRLSATYS ILFAGILGFG
401: IAVCLNSLYL HYFAWRVRVA QNSSPV
Arabidopsis Description
AT3g06330/F24P17_21 [Source:UniProtKB/TrEMBL;Acc:Q9SQT6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.