Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- plasma membrane 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G005100.1 | Wheat | plasma membrane | 46.14 | 43.47 |
| HORVU6Hr1G001690.9 | Barley | cytosol, nucleus | 9.77 | 9.35 |
| TraesCS7A01G463200.1 | Wheat | cytosol, nucleus, plasma membrane | 6.14 | 5.57 |
| Solyc09g007680.2.1 | Tomato | cytosol, nucleus, plasma membrane | 5.68 | 4.83 |
| Solyc11g069350.1.1 | Tomato | cytosol, nucleus, plasma membrane | 5.68 | 4.78 |
| KRH29926 | Soybean | nucleus | 5.68 | 4.78 |
| PGSC0003DMT400004459 | Potato | cytosol, nucleus, plasma membrane | 5.45 | 4.65 |
| PGSC0003DMT400020932 | Potato | cytosol, peroxisome, plasma membrane | 5.23 | 4.47 |
| TraesCS2A01G039300.2 | Wheat | cytosol, peroxisome, plasma membrane | 5.0 | 4.35 |
| KRH24873 | Soybean | nucleus | 5.0 | 4.28 |
| PGSC0003DMT400058815 | Potato | cytosol, peroxisome, plasma membrane | 4.09 | 4.28 |
| AT3G06330.1 | Thale cress | cytosol | 4.09 | 4.23 |
| KRH26426 | Soybean | plastid | 4.32 | 4.18 |
| CDY18852 | Canola | cytosol | 4.09 | 4.16 |
| AT3G09760.1 | Thale cress | nucleus | 4.55 | 4.07 |
| Solyc01g067800.2.1 | Tomato | plastid | 3.41 | 3.91 |
| KRH11284 | Soybean | cytosol | 3.64 | 3.79 |
| KRG90054 | Soybean | cytosol, peroxisome, vacuole | 3.86 | 3.58 |
| CDY05254 | Canola | cytosol | 3.41 | 3.37 |
| Bra040226.1-P | Field mustard | cytosol | 3.18 | 3.33 |
| Bra001193.1-P | Field mustard | cytosol | 3.18 | 3.21 |
| CDY08057 | Canola | cytosol, peroxisome, plasma membrane | 3.18 | 3.2 |
| Bra020758.1-P | Field mustard | cytosol | 3.18 | 3.16 |
| VIT_05s0020g02080.t01 | Wine grape | cytosol | 2.95 | 3.03 |
| CDY24702 | Canola | cytosol | 2.95 | 2.94 |
| CDX74109 | Canola | cytosol, peroxisome, plasma membrane | 2.73 | 2.75 |
| CDY44727 | Canola | cytosol | 2.05 | 2.47 |
| VIT_12s0034g00630.t01 | Wine grape | cytosol, nucleus | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:TraesCS6A01G001000.1 | EnsemblPlantsGene:TraesCS6A01G001000 | Gene3D:3.30.40.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0008270 |
| InterPro:IPR011016 | InterPro:IPR013083 | InterPro:MARCH-like | InterPro:Znf_RING-CH | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR23012 |
| PANTHER:PTHR23012:SF151 | PFAM:PF12906 | PFscan:PS51292 | SEG:seg | SMART:SM00744 | SUPFAM:SSF57850 |
| TIGR:cd16495 | TMHMM:TMhelix | MapMan:19.2.2.1.5.3.4 | : | : | : |
Description
No Description!
Coordinates
chr6A:+:637753..639156
Molecular Weight (calculated)
47452.4 Da
IEP (calculated)
6.075
GRAVY (calculated)
-0.255
Length
440 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPQQESNKD DGAATTPAME EEEEEHHRHG ERPLLSACEQ EDGSKPLPLL VKRRRRSSSL SRSSRSGEQG REEEAPGPRS LSFSRLFSSF RMMAASSTTM
101: DIDELAAAED GCAALNPQQQ WRKPVCRTQS LPMTSISRRL PSRKRVADSS SLRRFRLSSA APAPLPESAS PPSSPSPSAE EGGDGEEVGE EEAVCRICMV
201: ALLEEEEEEE GGAGDGVLKL ECRCKGELAL AHRRCALKWF GIKGNPNCDV CGHDVLNLPV TLRRVAAPPP PPPPPLTAGN GNGGTSQEEE QEAREGRGLR
301: GVWRHGTVIL VTVSMLAYFC FLEQLLVGDH GNAAAALAVS VPFAVVLGTF SALTTAGMAS SRRYVWAYSA LQFLLVVLFT HLFYRYVNLQ AVIAIILSAF
401: AGFGVAICAN AMLLQAARWR AAVAARHTPP PSSDLDIPQP
101: DIDELAAAED GCAALNPQQQ WRKPVCRTQS LPMTSISRRL PSRKRVADSS SLRRFRLSSA APAPLPESAS PPSSPSPSAE EGGDGEEVGE EEAVCRICMV
201: ALLEEEEEEE GGAGDGVLKL ECRCKGELAL AHRRCALKWF GIKGNPNCDV CGHDVLNLPV TLRRVAAPPP PPPPPLTAGN GNGGTSQEEE QEAREGRGLR
301: GVWRHGTVIL VTVSMLAYFC FLEQLLVGDH GNAAAALAVS VPFAVVLGTF SALTTAGMAS SRRYVWAYSA LQFLLVVLFT HLFYRYVNLQ AVIAIILSAF
401: AGFGVAICAN AMLLQAARWR AAVAARHTPP PSSDLDIPQP
001: MMDDKARKEE EHHVSHQHNH SPLQRDGNSA EIAQGQELSS PGRDLWRRGL VLDLPSTTPE DTTRDDLFRR NASLTSSPVA KRVNFSPMSS PRVGQRGASL
101: SPSSSTSSSS RNKPNSLKNL IPKLSFKNRN SNNDNVDIEK AADLGFVSSP SSGNGRDRST WTLTNILTPR LKKTESLPVT PIAHSNPEST HGRFAVDLVT
201: STKKGPPLPI HRSRSVPAFN KDGSQRQLGV FRVIPTPNMS PTRNTIKLND ANVDGAEDVP EEEAVCRICL VELGEDSEAF KMECLCRGEL ALAHKECTIK
301: WFTIKGNRTC DVCKQEVQNL PVTLLRMQNS RGSIGAPDAE AAHYSLWQDV PILVIVSMLA YFCFLEQLLL TKMQSGAIAV SLPFSCVLGL FASMTATTMV
401: PKRYVWIYAT TQFGLVVFFS HIFFTLVRMQ PVVAILLATI VGFGLTMSGT TGIVEFSKWR RSNRTAELPS SSQVDQPLVE TTDQNISGSR N
101: SPSSSTSSSS RNKPNSLKNL IPKLSFKNRN SNNDNVDIEK AADLGFVSSP SSGNGRDRST WTLTNILTPR LKKTESLPVT PIAHSNPEST HGRFAVDLVT
201: STKKGPPLPI HRSRSVPAFN KDGSQRQLGV FRVIPTPNMS PTRNTIKLND ANVDGAEDVP EEEAVCRICL VELGEDSEAF KMECLCRGEL ALAHKECTIK
301: WFTIKGNRTC DVCKQEVQNL PVTLLRMQNS RGSIGAPDAE AAHYSLWQDV PILVIVSMLA YFCFLEQLLL TKMQSGAIAV SLPFSCVLGL FASMTATTMV
401: PKRYVWIYAT TQFGLVVFFS HIFFTLVRMQ PVVAILLATI VGFGLTMSGT TGIVEFSKWR RSNRTAELPS SSQVDQPLVE TTDQNISGSR N
Arabidopsis Description
At3g09760/F8A24.19 [Source:UniProtKB/TrEMBL;Acc:Q940P1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.