Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, cytosol, plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 1
- plasma membrane 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc11g069350.1.1 | Tomato | cytosol, nucleus, plasma membrane | 96.11 | 94.46 |
| KRH29926 | Soybean | nucleus | 42.8 | 42.06 |
| KRH24873 | Soybean | nucleus | 41.25 | 41.25 |
| KRH26426 | Soybean | plastid | 17.9 | 20.22 |
| PGSC0003DMT400002463 | Potato | plasma membrane | 2.92 | 8.29 |
| PGSC0003DMT400004459 | Potato | cytosol, nucleus, plasma membrane | 5.45 | 5.43 |
| TraesCS6A01G001000.1 | Wheat | cytosol, nucleus, plasma membrane | 4.47 | 5.23 |
| HORVU6Hr1G001690.9 | Barley | cytosol, nucleus | 4.67 | 5.22 |
| PGSC0003DMT400074985 | Potato | cytosol, nucleus, plasma membrane | 4.86 | 5.01 |
| TraesCS6D01G005100.1 | Wheat | plasma membrane | 4.09 | 4.5 |
| PGSC0003DMT400058815 | Potato | cytosol, peroxisome, plasma membrane | 2.72 | 3.33 |
| PGSC0003DMT400002459 | Potato | plastid | 1.36 | 2.68 |
Protein Annotations
| MapMan:19.2.2.1.5.3.4 | Gene3D:3.30.40.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0008270 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0046872 | InterPro:IPR011016 | InterPro:IPR013083 | UniProt:M1AEB5 |
| InterPro:MARCH-like | PFAM:PF12906 | EnsemblPlantsGene:PGSC0003DMG400008105 | PGSC:PGSC0003DMG400008105 | EnsemblPlants:PGSC0003DMT400020932 | PFscan:PS51292 |
| PANTHER:PTHR23012 | PANTHER:PTHR23012:SF25 | SMART:SM00744 | SUPFAM:SSF57850 | TMHMM:TMhelix | UniParc:UPI000296C4F4 |
| InterPro:Znf_RING-CH | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : | : |
Description
Zinc finger family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400008105]
Coordinates
chr11:+:41289125..41293394
Molecular Weight (calculated)
57027.0 Da
IEP (calculated)
8.865
GRAVY (calculated)
-0.174
Length
514 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEVVDNDGK IGVCEKEFVI STPKIERSST ITEETTHAKH WRKPNLSLDI PSRTLDASPQ ELVQIKRPFT PTPKRVNFLL TPSTCDSRIT TSSPGPSPCR
101: GKATIRNLFP KLSLKSRMNS DTEKITVPDS GPTAAVVPQQ EKVSISRSWS LSKMFTPRIK RTSSLPVTPI AHSNPESISG SISNSLTLGT KETHVCISRS
201: MSLPVINKEK EGSNRRVEFF FRVIPSTPQV KDVDSSSVPA TSPAKVPEEN EQGGEDIPEE EAVCRICLVE LCEGGETLKM ECSCKGELAL AHQECALKWF
301: SIKGNKTCDV CKQEVKNLPV TLLRMQSVRN ANAGSNRYRY MELNGHRVWQ ELPILVIVSM LAYFCFLEQL LVGKMGTGAI AISLPFSCVL GLLASMTSST
401: MVKRRFVWVY ASVQFALVVL FAHIFYSLVR VQPVLSILLS TFAGFGVAMS ASSLLVEFFR WKRRRAALLE QQQNAEMILP PGGWPHMNQP ATTSRVGPQN
501: HQHDIENPET FSWS
101: GKATIRNLFP KLSLKSRMNS DTEKITVPDS GPTAAVVPQQ EKVSISRSWS LSKMFTPRIK RTSSLPVTPI AHSNPESISG SISNSLTLGT KETHVCISRS
201: MSLPVINKEK EGSNRRVEFF FRVIPSTPQV KDVDSSSVPA TSPAKVPEEN EQGGEDIPEE EAVCRICLVE LCEGGETLKM ECSCKGELAL AHQECALKWF
301: SIKGNKTCDV CKQEVKNLPV TLLRMQSVRN ANAGSNRYRY MELNGHRVWQ ELPILVIVSM LAYFCFLEQL LVGKMGTGAI AISLPFSCVL GLLASMTSST
401: MVKRRFVWVY ASVQFALVVL FAHIFYSLVR VQPVLSILLS TFAGFGVAMS ASSLLVEFFR WKRRRAALLE QQQNAEMILP PGGWPHMNQP ATTSRVGPQN
501: HQHDIENPET FSWS
001: MATEEKPLNS LDLSHDDSSP ASNQAEGSSA ITEDTSANVQ QWRRKNLSLQ IPSRAAGLSP EDSVVIKMPP TPSPTPRRVN FALTSSSPGP TPTSSSVLPR
101: GKSSLKNLLP KAGCKPKTSN TDIEKGQGNA CSPPASQEKA SISRSLSLSK LFTPRIKRTS SLPVTPVILS NSESAHGGTS VAPQTPNRKG SVHIARSRSV
201: PLNDKELSLK GMDSFFRVIP STPRVKEGDV FSNASEAGNT ETGDADGEDI PEDEAVCRIC LVELCEGGET LKMECSCKGE LALAHKDCAL KWFTIKGNKT
301: CEVCKQEVKN LPVTLLRIQS LRNSGVPQLD VSGYRVWQEV PVLVIISMLA YFCFLEQLLV ENMGTGAIAI SLPFSCILGL LASMTASTMV MRRFVWIYAS
401: VQFALVVLFA HIFYSVVKLQ PVLSVLLSTF AGFGVCICGS SVMVEFVRWR RRWRARRLEQ QLNHALTLSQ PPQPLDPTTS LHHSNTS
101: GKSSLKNLLP KAGCKPKTSN TDIEKGQGNA CSPPASQEKA SISRSLSLSK LFTPRIKRTS SLPVTPVILS NSESAHGGTS VAPQTPNRKG SVHIARSRSV
201: PLNDKELSLK GMDSFFRVIP STPRVKEGDV FSNASEAGNT ETGDADGEDI PEDEAVCRIC LVELCEGGET LKMECSCKGE LALAHKDCAL KWFTIKGNKT
301: CEVCKQEVKN LPVTLLRIQS LRNSGVPQLD VSGYRVWQEV PVLVIISMLA YFCFLEQLLV ENMGTGAIAI SLPFSCILGL LASMTASTMV MRRFVWIYAS
401: VQFALVVLFA HIFYSVVKLQ PVLSVLLSTF AGFGVCICGS SVMVEFVRWR RRWRARRLEQ QLNHALTLSQ PPQPLDPTTS LHHSNTS
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4K0E2]
SUBAcon: [peroxisome,nucleus,cytosol]
SUBAcon: [peroxisome,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.