Subcellular Localization
min:
: max
Winner_takes_all: nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G005100.1 | Wheat | plasma membrane | 13.91 | 13.7 |
| TraesCS6A01G001000.1 | Wheat | cytosol, nucleus, plasma membrane | 9.35 | 9.77 |
| KRG90054 | Soybean | cytosol, peroxisome, vacuole | 5.43 | 5.26 |
| AT3G06330.1 | Thale cress | cytosol | 4.35 | 4.69 |
| PGSC0003DMT400020932 | Potato | cytosol, peroxisome, plasma membrane | 5.22 | 4.67 |
| Solyc11g069350.1.1 | Tomato | cytosol, nucleus, plasma membrane | 5.22 | 4.59 |
| PGSC0003DMT400058815 | Potato | cytosol, peroxisome, plasma membrane | 3.91 | 4.28 |
| CDY05254 | Canola | cytosol | 4.13 | 4.27 |
| CDY44727 | Canola | cytosol | 3.26 | 4.12 |
| HORVU2Hr1G005630.19 | Barley | mitochondrion | 5.0 | 4.07 |
| VIT_05s0020g02080.t01 | Wine grape | cytosol | 3.7 | 3.96 |
| Solyc01g067800.2.1 | Tomato | plastid | 3.26 | 3.91 |
| AT3G09760.1 | Thale cress | nucleus | 4.13 | 3.87 |
| KRH11284 | Soybean | cytosol | 3.48 | 3.79 |
| CDY08057 | Canola | cytosol, peroxisome, plasma membrane | 3.48 | 3.66 |
| CDX74109 | Canola | cytosol, peroxisome, plasma membrane | 3.48 | 3.66 |
| HORVU0Hr1G022270.4 | Barley | plastid | 4.35 | 3.66 |
| KRH26426 | Soybean | plastid | 3.48 | 3.52 |
| Bra001193.1-P | Field mustard | cytosol | 3.26 | 3.44 |
| CDY24702 | Canola | cytosol | 3.26 | 3.39 |
| Bra020758.1-P | Field mustard | cytosol | 3.26 | 3.39 |
| CDY18852 | Canola | cytosol | 3.04 | 3.23 |
| KRH24873 | Soybean | nucleus | 3.48 | 3.11 |
| PGSC0003DMT400004459 | Potato | cytosol, nucleus, plasma membrane | 3.26 | 2.91 |
| KRH29926 | Soybean | nucleus | 3.26 | 2.87 |
| Solyc09g007680.2.1 | Tomato | cytosol, nucleus, plasma membrane | 3.04 | 2.7 |
| Bra040226.1-P | Field mustard | cytosol | 2.17 | 2.38 |
| VIT_12s0034g00630.t01 | Wine grape | cytosol, nucleus | 0.0 | 0.0 |
Protein Annotations
| MapMan:19.2.2.1.5.3.4 | Gene3D:3.30.40.10 | UniProt:A0A287T4S0 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0008270 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0046872 | EnsemblPlantsGene:HORVU6Hr1G001690 | EnsemblPlants:HORVU6Hr1G001690.9 |
| InterPro:IPR011016 | InterPro:IPR013083 | InterPro:MARCH-like | PFAM:PF12906 | PFscan:PS51292 | PANTHER:PTHR23012 |
| PANTHER:PTHR23012:SF151 | SMART:SM00744 | SUPFAM:SSF57850 | TMHMM:TMhelix | UniParc:UPI000B47DE6A | InterPro:Znf_RING-CH |
| InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chrchr6H:+:5176106..5177696
Molecular Weight (calculated)
50185.6 Da
IEP (calculated)
6.846
GRAVY (calculated)
-0.322
Length
460 amino acids
Sequence
(BLAST)
(BLAST)
001: PSITIRHCPG FIALAEGSKM EEEEDEEEHR RHRHGERPLL SACAQEEQEE ASKPLPLPAK RRRRRSLSRS SRSGEQEDGA TRSLSFSRLF SSFRMIAAAA
101: VDIDQDQLAA AEDGRAALNP HHHHHHQPPY PKPVCRTQSL PMTSISRRLP APHGHHRKRV ADSSSLRRFR VSSSLSSAPP VPLPESESSP PSSPLPSPSE
201: EEEGEEVGEE EAVCRICMVA LCEEEDEEEE GGGDGDGVVL KLECRCKGEL ALAHRRCALR WFGIKGNANC DVCGHDVLNL PVTLRRLPVP PPPPPPTAGN
301: NGGANQEGEG GGERRGLRGV WRHGTVILVV VSMLAYFCFL EQLLVGDHGS NAAAALAVSV PFAVVLGTFS ALTTAGMVSS RRYVWAYSAL QFLLVVLFTH
401: LFYRYVKLQA VIAIILSTFA GFGVAICTNA VLLQAIRWKA AADTARRPSP SEPDHHIPEP
101: VDIDQDQLAA AEDGRAALNP HHHHHHQPPY PKPVCRTQSL PMTSISRRLP APHGHHRKRV ADSSSLRRFR VSSSLSSAPP VPLPESESSP PSSPLPSPSE
201: EEEGEEVGEE EAVCRICMVA LCEEEDEEEE GGGDGDGVVL KLECRCKGEL ALAHRRCALR WFGIKGNANC DVCGHDVLNL PVTLRRLPVP PPPPPPTAGN
301: NGGANQEGEG GGERRGLRGV WRHGTVILVV VSMLAYFCFL EQLLVGDHGS NAAAALAVSV PFAVVLGTFS ALTTAGMVSS RRYVWAYSAL QFLLVVLFTH
401: LFYRYVKLQA VIAIILSTFA GFGVAICTNA VLLQAIRWKA AADTARRPSP SEPDHHIPEP
001: MMDDKARKEE EHHVSHQHNH SPLQRDGNSA EIAQGQELSS PGRDLWRRGL VLDLPSTTPE DTTRDDLFRR NASLTSSPVA KRVNFSPMSS PRVGQRGASL
101: SPSSSTSSSS RNKPNSLKNL IPKLSFKNRN SNNDNVDIEK AADLGFVSSP SSGNGRDRST WTLTNILTPR LKKTESLPVT PIAHSNPEST HGRFAVDLVT
201: STKKGPPLPI HRSRSVPAFN KDGSQRQLGV FRVIPTPNMS PTRNTIKLND ANVDGAEDVP EEEAVCRICL VELGEDSEAF KMECLCRGEL ALAHKECTIK
301: WFTIKGNRTC DVCKQEVQNL PVTLLRMQNS RGSIGAPDAE AAHYSLWQDV PILVIVSMLA YFCFLEQLLL TKMQSGAIAV SLPFSCVLGL FASMTATTMV
401: PKRYVWIYAT TQFGLVVFFS HIFFTLVRMQ PVVAILLATI VGFGLTMSGT TGIVEFSKWR RSNRTAELPS SSQVDQPLVE TTDQNISGSR N
101: SPSSSTSSSS RNKPNSLKNL IPKLSFKNRN SNNDNVDIEK AADLGFVSSP SSGNGRDRST WTLTNILTPR LKKTESLPVT PIAHSNPEST HGRFAVDLVT
201: STKKGPPLPI HRSRSVPAFN KDGSQRQLGV FRVIPTPNMS PTRNTIKLND ANVDGAEDVP EEEAVCRICL VELGEDSEAF KMECLCRGEL ALAHKECTIK
301: WFTIKGNRTC DVCKQEVQNL PVTLLRMQNS RGSIGAPDAE AAHYSLWQDV PILVIVSMLA YFCFLEQLLL TKMQSGAIAV SLPFSCVLGL FASMTATTMV
401: PKRYVWIYAT TQFGLVVFFS HIFFTLVRMQ PVVAILLATI VGFGLTMSGT TGIVEFSKWR RSNRTAELPS SSQVDQPLVE TTDQNISGSR N
Arabidopsis Description
At3g09760/F8A24.19 [Source:UniProtKB/TrEMBL;Acc:Q940P1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.