Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G451000.1 | Wheat | cytosol, nucleus, plasma membrane | 82.63 | 93.2 |
| TraesCS7A01G463200.1 | Wheat | cytosol, nucleus, plasma membrane | 75.69 | 85.36 |
| TraesCS7B01G363900.1 | Wheat | cytosol, nucleus, plasma membrane | 61.43 | 69.57 |
| GSMUA_Achr11P... | Banana | endoplasmic reticulum, plasma membrane, vacuole | 17.73 | 64.67 |
| GSMUA_Achr5P00540_001 | Banana | cytosol, nucleus, plasma membrane | 35.1 | 38.02 |
| EER88810 | Sorghum | cytosol, nucleus, plasma membrane, plastid | 27.61 | 31.26 |
| Zm00001d014385_P001 | Maize | cytosol, nucleus, plasma membrane, plastid | 27.24 | 30.91 |
| Solyc07g044780.2.1 | Tomato | cytosol | 28.88 | 30.56 |
| VIT_12s0028g01200.t01 | Wine grape | cytosol, endoplasmic reticulum, peroxisome | 14.44 | 15.13 |
| KRH17646 | Soybean | cytosol, peroxisome, plasma membrane | 11.52 | 13.52 |
| Os02t0165000-01 | Rice | plasma membrane | 9.14 | 10.27 |
| KRH74078 | Soybean | cytosol | 9.14 | 9.67 |
| KRH14034 | Soybean | plasma membrane | 9.14 | 9.54 |
| CDY69891 | Canola | plasma membrane | 2.01 | 5.91 |
| HORVU2Hr1G005630.19 | Barley | mitochondrion | 5.85 | 5.66 |
| HORVU6Hr1G001690.9 | Barley | cytosol, nucleus | 3.66 | 4.35 |
Protein Annotations
| MapMan:19.2.2.1.5.3.4 | Gene3D:3.30.40.10 | UniProt:A0A287E7B6 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0008270 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0046872 | EnsemblPlantsGene:HORVU0Hr1G022270 | EnsemblPlants:HORVU0Hr1G022270.4 |
| InterPro:IPR011016 | InterPro:IPR013083 | InterPro:MARCH-like | PFAM:PF12906 | PFscan:PS51292 | PANTHER:PTHR23012 |
| PANTHER:PTHR23012:SF118 | SMART:SM00744 | SUPFAM:SSF57850 | TMHMM:TMhelix | UniParc:UPI000B47FC25 | InterPro:Znf_RING-CH |
| InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chrchrUn:-:114423369..114427569
Molecular Weight (calculated)
59815.4 Da
IEP (calculated)
9.855
GRAVY (calculated)
-0.357
Length
547 amino acids
Sequence
(BLAST)
(BLAST)
001: PAHPQSCCFR RTPPAHLPSF PCLRSSTAAA SQRQQRHTPP PFLPSPRFVP HSLSSRIELS AAAPMDPPPP PTRPADRAAQ DQDDTAQSAQ GPNSRRPNLS
101: LQIPTRTLDN HLPTSTRINI SASPSSTRTG LPPRPNSARP KSSIKQQSFR LRSSAQEGDR TILLLPGTGS EGLQDNPIQP GSFSFRKVIN SLSAKRTYSL
201: PVTPVGTSDK ASPLGIQIVD QPTASKQEVQ AQIRRSLSVP GNRKNRSLRR ADSLGVIRVI PTTPRPVPAD TVAPTDATEE TVDGPGDGGE DIPEEEAVCR
301: ICFVELNEGG ETLKMECSCK GELALAHQDC AVKWFSIKGN KICDVCRQEV RNLPVTLLRL PTQTVTRRLA NGAQQRAAQQ YRFWQDIPIL VMVSMLAYFC
401: FLEQLLVTDL QSRALAISLP FSCVLGLLSS MIASTMVTKS YLWAYASFQF AIVILFAHIF YNVLRVNAVL AVLLSSFTGF GIAISTNSLL VECMRWRSRR
501: RSQRLAQTQP QPTNEDQHPG SGNNSASENS GDRQQQGQPP QSGVHIV
101: LQIPTRTLDN HLPTSTRINI SASPSSTRTG LPPRPNSARP KSSIKQQSFR LRSSAQEGDR TILLLPGTGS EGLQDNPIQP GSFSFRKVIN SLSAKRTYSL
201: PVTPVGTSDK ASPLGIQIVD QPTASKQEVQ AQIRRSLSVP GNRKNRSLRR ADSLGVIRVI PTTPRPVPAD TVAPTDATEE TVDGPGDGGE DIPEEEAVCR
301: ICFVELNEGG ETLKMECSCK GELALAHQDC AVKWFSIKGN KICDVCRQEV RNLPVTLLRL PTQTVTRRLA NGAQQRAAQQ YRFWQDIPIL VMVSMLAYFC
401: FLEQLLVTDL QSRALAISLP FSCVLGLLSS MIASTMVTKS YLWAYASFQF AIVILFAHIF YNVLRVNAVL AVLLSSFTGF GIAISTNSLL VECMRWRSRR
501: RSQRLAQTQP QPTNEDQHPG SGNNSASENS GDRQQQGQPP QSGVHIV
001: MATEEKPLNS LDLSHDDSSP ASNQAEGSSA ITEDTSANVQ QWRRKNLSLQ IPSRAAGLSP EDSVVIKMPP TPSPTPRRVN FALTSSSPGP TPTSSSVLPR
101: GKSSLKNLLP KAGCKPKTSN TDIEKGQGNA CSPPASQEKA SISRSLSLSK LFTPRIKRTS SLPVTPVILS NSESAHGGTS VAPQTPNRKG SVHIARSRSV
201: PLNDKELSLK GMDSFFRVIP STPRVKEGDV FSNASEAGNT ETGDADGEDI PEDEAVCRIC LVELCEGGET LKMECSCKGE LALAHKDCAL KWFTIKGNKT
301: CEVCKQEVKN LPVTLLRIQS LRNSGVPQLD VSGYRVWQEV PVLVIISMLA YFCFLEQLLV ENMGTGAIAI SLPFSCILGL LASMTASTMV MRRFVWIYAS
401: VQFALVVLFA HIFYSVVKLQ PVLSVLLSTF AGFGVCICGS SVMVEFVRWR RRWRARRLEQ QLNHALTLSQ PPQPLDPTTS LHHSNTS
101: GKSSLKNLLP KAGCKPKTSN TDIEKGQGNA CSPPASQEKA SISRSLSLSK LFTPRIKRTS SLPVTPVILS NSESAHGGTS VAPQTPNRKG SVHIARSRSV
201: PLNDKELSLK GMDSFFRVIP STPRVKEGDV FSNASEAGNT ETGDADGEDI PEDEAVCRIC LVELCEGGET LKMECSCKGE LALAHKDCAL KWFTIKGNKT
301: CEVCKQEVKN LPVTLLRIQS LRNSGVPQLD VSGYRVWQEV PVLVIISMLA YFCFLEQLLV ENMGTGAIAI SLPFSCILGL LASMTASTMV MRRFVWIYAS
401: VQFALVVLFA HIFYSVVKLQ PVLSVLLSTF AGFGVCICGS SVMVEFVRWR RRWRARRLEQ QLNHALTLSQ PPQPLDPTTS LHHSNTS
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4K0E2]
SUBAcon: [peroxisome,nucleus,cytosol]
SUBAcon: [peroxisome,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.