Factsheet for VIT_12s0028g01200.t01

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, cytosol, peroxisome

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
endoplasmic reticulum 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH17646	Soybean	cytosol, peroxisome, plasma membrane	29.5	33.05
KRH74078	Soybean	cytosol	23.95	24.18
KRH14034	Soybean	plasma membrane	24.14	24.05
GSMUA_Achr11P...	Banana	endoplasmic reticulum, plasma membrane, vacuole	6.32	22.0
TraesCS7D01G451000.1	Wheat	cytosol, nucleus, plasma membrane	15.13	16.29
Os06t0677300-01	Rice	plasma membrane	14.94	16.15
TraesCS7B01G363900.1	Wheat	cytosol, nucleus, plasma membrane	14.75	15.94
TraesCS7A01G463200.1	Wheat	cytosol, nucleus, plasma membrane	14.75	15.88
EER88810	Sorghum	cytosol, nucleus, plasma membrane, plastid	14.37	15.53
Zm00001d014385_P001	Maize	cytosol, nucleus, plasma membrane, plastid	14.18	15.35
Solyc07g044780.2.1	Tomato	cytosol	15.13	15.28
HORVU0Hr1G022270.4	Barley	plastid	15.13	14.44
Os02t0165000-01	Rice	plasma membrane	13.41	14.37
GSMUA_Achr5P00540_001	Banana	cytosol, nucleus, plasma membrane	12.45	12.87
VIT_08s0040g01950.t01	Wine grape	cytosol, nucleus, plasma membrane	6.32	6.4
CDY69891	Canola	plasma membrane	1.92	5.38
VIT_06s0004g02930.t01	Wine grape	cytosol, peroxisome, plasma membrane	3.07	3.23
VIT_05s0020g02080.t01	Wine grape	cytosol	1.92	2.33
VIT_12s0034g00630.t01	Wine grape	cytosol, nucleus	0.0	0.0

Protein Annotations

EntrezGene:100243829	wikigene:100243829	MapMan:19.2.2.1.5.3.4	Gene3D:3.30.40.10	ProteinID:CCB47433	ProteinID:CCB47433.1
ncoils:Coil	UniProt:F6H565	EMBL:FN595235	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575
GO:GO:0008270	GO:GO:0016020	GO:GO:0016021	GO:GO:0046872	InterPro:IPR011016	InterPro:IPR013083
EntrezGene:LOC100243829	wikigene:LOC100243829	InterPro:MARCH-like	PFAM:PF12906	PFscan:PS51292	PANTHER:PTHR23012
PANTHER:PTHR23012:SF118	SMART:SM00744	SUPFAM:SSF57850	TIGR:TC59341	TMHMM:TMhelix	UniParc:UPI0002109A9F
ArrayExpress:VIT_12s0028g01200	EnsemblPlantsGene:VIT_12s0028g01200	EnsemblPlants:VIT_12s0028g01200.t01	unigene:Vvi.9220	RefSeq:XP_003633259	RefSeq:XP_003633259.1
InterPro:Znf_RING-CH	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr12:-:1792331..1822291

Molecular Weight (calculated)

57916.7 Da

IEP (calculated)

7.076

GRAVY (calculated)

-0.398

Length

522 amino acids

Sequence
(BLAST)

001: MEVSGVELQP EVDATSDAPE HCQESNQKEK GEGTSLVQQS RRPNLSSLQI PVRSLENTSS AFARIEISSA PSPTSTKAGL PPRPPSAKFK SSMRNLLPQR
101: SLRAKNLSED GEKTVLIIPD TPSSDGPLDK PTTSRSFSLN KVLFPSVKAT YSLPATPIAS SGSESLQEKN LDGESDFSKV EVQHHMTRSL SVPVNVKARS
201: LRRMDSTGGL IRVISATPRP VAVDGASQDD APVTEIVSGD DGEDIPEEEA VCRICFIELG EGGDTLKLEC SCKGELALAH QDCAVKWFSI KGNKTCDVCK
301: QDVQNLPVTL LKIQNPQTVV RRPATLPQQR EETRYRVWQD VPVLVMVSML AYFCFLEQLL VTNLGPRALA ISLPFSCVLG LLSSMIASTM VSKSYIWAYA
401: SFQFAIVILF AHIFYTILNV NPILSVLLSS FTGFGIAIST NSLLVEYLRW RASRQVRSSD QNNRGVQQPQ RHHHHHHHHH QWQQQQQQQQ QQHQHQLQDL
501: IQESNTGPTE SSRQEENRIQ NT

Best Arabidopsis Sequence Match ( AT5G60580.3 )
(BLAST)

001: MATEEKPLNS LDLSHDDSSP ASNQAEGSSA ITEDTSANVQ QWRRKNLSLQ IPSRAAGLSP EDSVVIKMPP TPSPTPRRVN FALTSSSPGP TPTSSSVLPR
101: GKSSLKNLLP KAGCKPKTSN TDIEKGQGNA CSPPASQEKA SISRSLSLSK LFTPRIKRTS SLPVTPVILS NSESAHGGTS VAPQTPNRKG SVHIARSRSV
201: PLNDKELSLK GMDSFFRVIP STPRVKEGDV FSNASEAGNT ETGDADGEDI PEDEAVCRIC LVELCEGGET LKMECSCKGE LALAHKDCAL KWFTIKGNKT
301: CEVCKQEVKN LPVTLLRIQS LRNSGVPQLD VSGYRVWQEV PVLVIISMLA YFCFLEQLLV ENMGTGAIAI SLPFSCILGL LASMTASTMV MRRFVWIYAS
401: VQFALVVLFA HIFYSVVKLQ PVLSVLLSTF AGFGVCICGS SVMVEFVRWR RRWRARRLEQ QLNHALTLSQ PPQPLDPTTS LHHSNTS

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4K0E2]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.