Factsheet for TraesCS7B01G363900.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, nucleus, cytosol

Predictor Summary:

cytosol 1
mitochondrion 1
plasma membrane 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plasma membrane
Any Predictor:	cytosol, nucleus, plasma membrane
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G463200.1	Wheat	cytosol, nucleus, plasma membrane	73.29	72.99
TraesCS7D01G451000.1	Wheat	cytosol, nucleus, plasma membrane	73.08	72.78
GSMUA_Achr11P...	Banana	endoplasmic reticulum, plasma membrane, vacuole	20.29	65.33
HORVU0Hr1G022270.4	Barley	plastid	69.57	61.43
GSMUA_Achr5P00540_001	Banana	cytosol, nucleus, plasma membrane	38.1	36.44
Zm00001d014385_P001	Maize	cytosol, nucleus, plasma membrane, plastid	32.71	32.78
EER88810	Sorghum	cytosol, nucleus, plasma membrane, plastid	32.09	32.09
Solyc07g044780.2.1	Tomato	cytosol	29.81	27.85
VIT_12s0028g01200.t01	Wine grape	cytosol, endoplasmic reticulum, peroxisome	15.94	14.75
KRH17646	Soybean	cytosol, peroxisome, plasma membrane	12.01	12.45
Os02t0165000-01	Rice	plasma membrane	11.8	11.7
KRH74078	Soybean	cytosol	9.32	8.7
KRH14034	Soybean	plasma membrane	9.32	8.59
TraesCS6B01G005200.1	Wheat	cytosol, nucleus, plasma membrane	6.63	7.02
CDY69891	Canola	plasma membrane	2.48	6.45
TraesCS2B01G051700.1	Wheat	cytosol, peroxisome, plasma membrane	5.59	5.47

Protein Annotations

EnsemblPlants:TraesCS7B01G363900.1	EnsemblPlantsGene:TraesCS7B01G363900	Gene3D:3.30.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0008270
InterPro:IPR011016	InterPro:IPR013083	InterPro:MARCH-like	InterPro:Znf_RING-CH	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR23012
PANTHER:PTHR23012:SF118	PFAM:PF12906	PFscan:PS51292	SEG:seg	SMART:SM00744	SUPFAM:SSF57850
TIGR:cd16495	TMHMM:TMhelix	MapMan:19.2.2.1.5.3.4	:	:	:

Description

No Description!

Coordinates

chr7B:-:626239143..626242744

Molecular Weight (calculated)

52752.9 Da

IEP (calculated)

9.137

GRAVY (calculated)

-0.327

Length

483 amino acids

Sequence
(BLAST)

001: MDRADGPPPP RSGDRAAQDQ DDTAQSAQGQ NSRRPNLSLQ IPTRTLDNHI PTSTRINISA SPSSTRAGLP PRPNSARPKS SIKQQSFRLR NSAQEGDRTI
101: LLLPGTASEG SLDNPTQPGS FSFRKVINSL SAKRTYSLPV TPVGTSDKAS PGIQIVDHPT TSKQEVQAQI RRSLSVPGNR KNRSLRRADS LGVIRVIPAT
201: PRPVPADTVV PTDVIEETAD GPEDGGEDIP EEEAVCRICF VELNEGGETL KMECSCKGEL ALAHQDCAVK WFSIKGNKIC DVCRQEVKNL PVTLMRIPTQ
301: TVTRRLANGA QQRAAQQYRF WQDIPILVMV SMLAYFCFLE QLLVTDLQSR ALAISLPFSC VLGLLSSMIA STMVTKSYLW AYASFQFAIV ILFAHIFYNV
401: LKVNAVLAVL LSSFTGFGIA ISTNSLLVEG MRWRSRRSQR LAQTQPQPAN EGQHPESGSN AVSENSGDRQ QQGQPPQSGV HIV

Best Arabidopsis Sequence Match ( AT5G60580.3 )
(BLAST)

001: MATEEKPLNS LDLSHDDSSP ASNQAEGSSA ITEDTSANVQ QWRRKNLSLQ IPSRAAGLSP EDSVVIKMPP TPSPTPRRVN FALTSSSPGP TPTSSSVLPR
101: GKSSLKNLLP KAGCKPKTSN TDIEKGQGNA CSPPASQEKA SISRSLSLSK LFTPRIKRTS SLPVTPVILS NSESAHGGTS VAPQTPNRKG SVHIARSRSV
201: PLNDKELSLK GMDSFFRVIP STPRVKEGDV FSNASEAGNT ETGDADGEDI PEDEAVCRIC LVELCEGGET LKMECSCKGE LALAHKDCAL KWFTIKGNKT
301: CEVCKQEVKN LPVTLLRIQS LRNSGVPQLD VSGYRVWQEV PVLVIISMLA YFCFLEQLLV ENMGTGAIAI SLPFSCILGL LASMTASTMV MRRFVWIYAS
401: VQFALVVLFA HIFYSVVKLQ PVLSVLLSTF AGFGVCICGS SVMVEFVRWR RRWRARRLEQ QLNHALTLSQ PPQPLDPTTS LHHSNTS

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4K0E2]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.