Factsheet for Os02t0165000-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 2
cytosol 1
plastid 2
plasma membrane 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 18260611

msms PMID: 18260611 doi

SH Natera, KL Ford, AM Cassin, JH Patterson, EJ Newbigin, A Bacic

Plant Cell Biology Research Centre, VIC, Australia. s.natera@unimelb.edu.au

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH74078	Soybean	cytosol	26.49	24.95
KRH17646	Soybean	cytosol, peroxisome, plasma membrane	16.63	17.38
GSMUA_Achr11P...	Banana	endoplasmic reticulum, plasma membrane, vacuole	5.34	17.33
Zm00001d014385_P001	Maize	cytosol, nucleus, plasma membrane, plastid	14.17	14.32
EER88810	Sorghum	cytosol, nucleus, plasma membrane, plastid	13.96	14.08
VIT_12s0028g01200.t01	Wine grape	cytosol, endoplasmic reticulum, peroxisome	14.37	13.41
Os06t0677300-01	Rice	plasma membrane	13.14	13.25
GSMUA_Achr5P00540_001	Banana	cytosol, nucleus, plasma membrane	13.14	12.67
TraesCS7B01G363900.1	Wheat	cytosol, nucleus, plasma membrane	11.7	11.8
TraesCS7A01G463200.1	Wheat	cytosol, nucleus, plasma membrane	10.88	10.93
KRH14034	Soybean	plasma membrane	11.5	10.69
Solyc07g044780.2.1	Tomato	cytosol	11.09	10.44
TraesCS7D01G451000.1	Wheat	cytosol, nucleus, plasma membrane	10.27	10.31
HORVU0Hr1G022270.4	Barley	plastid	10.27	9.14
Os04t0105100-01	Rice	plasma membrane	6.16	6.54
CDY69891	Canola	plasma membrane	2.46	6.45
Os06t0340200-02	Rice	cytosol, endoplasmic reticulum, peroxisome, plastid	6.37	6.24

Protein Annotations

MapMan:19.2.2.1.5.3.4	Gene3D:3.30.40.10	EntrezGene:4328407	EMBL:AK069562	ProteinID:BAD25170.1	ProteinID:BAD25546.1
ProteinID:BAF07908.1	ProteinID:BAS77144.1	ProteinID:EEE56370.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575
GO:GO:0008270	GO:GO:0016020	GO:GO:0016021	GO:GO:0046872	InterPro:IPR011016	InterPro:IPR013083
InterPro:MARCH-like	EnsemblPlantsGene:Os02g0165000	EnsemblPlants:Os02t0165000-01	PFAM:PF12906	PFscan:PS51292	PANTHER:PTHR23012
PANTHER:PTHR23012:SF118	UniProt:Q6H6V3	SMART:SM00744	SUPFAM:SSF57850	TMHMM:TMhelix	UniParc:UPI00003B4393
RefSeq:XP_015625707.1	RefSeq:XP_015625708.1	InterPro:Znf_RING-CH	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os02t0165000-01);Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os02t0165000-02)

Coordinates

chr2:-:3495320..3500149

Molecular Weight (calculated)

52884.8 Da

IEP (calculated)

9.023

GRAVY (calculated)

-0.301

Length

487 amino acids

Sequence
(BLAST)

001: MDSPGGAAAA AAAAESSNRA GEDAKSDGVS CQNSRRPNLS LQIPNRAFDD TLPTSTRIKI SPSPNSARSG LPPRPNSTRT KSSIRGIIPQ RSFKAKSSLQ
101: DGDQTILLIP DTPSSSGQQV KATTSRSFSF TKVINSLSAK RTHSLPVTPV AASGPSSHEG HADNLPSTVK NEVETQIRRS LSAPGNHDSK DLRRTASSGL
201: IRVIPTTPRP VPVETVASND GIEEAVDAPE DGGEDIPEED AVCRICLVEL NEGGETLKLE CSCKGELALA HQECAIKWFS IKGNKTCDVC RQEVQNLPVT
301: LLRIQIRTVN RQPRNGVQQR AAHPHRFWKE TPVLVMVSTL AYFCFLEQLL VADMKSRALA ISLPFSCLLG IFSSILASTM ATDNYLWAFA TFQFAFLILF
401: AHIFYNLLKM GAVLAILLAS FTGFGIAISL NAMLIEYLRW RLLRNQRLTQ RRNHRHGQSG NNASNENTAS NARQQGSGSD QQSAEHG

Best Arabidopsis Sequence Match ( AT5G60580.3 )
(BLAST)

001: MATEEKPLNS LDLSHDDSSP ASNQAEGSSA ITEDTSANVQ QWRRKNLSLQ IPSRAAGLSP EDSVVIKMPP TPSPTPRRVN FALTSSSPGP TPTSSSVLPR
101: GKSSLKNLLP KAGCKPKTSN TDIEKGQGNA CSPPASQEKA SISRSLSLSK LFTPRIKRTS SLPVTPVILS NSESAHGGTS VAPQTPNRKG SVHIARSRSV
201: PLNDKELSLK GMDSFFRVIP STPRVKEGDV FSNASEAGNT ETGDADGEDI PEDEAVCRIC LVELCEGGET LKMECSCKGE LALAHKDCAL KWFTIKGNKT
301: CEVCKQEVKN LPVTLLRIQS LRNSGVPQLD VSGYRVWQEV PVLVIISMLA YFCFLEQLLV ENMGTGAIAI SLPFSCILGL LASMTASTMV MRRFVWIYAS
401: VQFALVVLFA HIFYSVVKLQ PVLSVLLSTF AGFGVCICGS SVMVEFVRWR RRWRARRLEQ QLNHALTLSQ PPQPLDPTTS LHHSNTS

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4K0E2]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.