Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, plastid, cytosol, peroxisome
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- plastid 2
- endoplasmic reticulum 1
- peroxisome 1
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d016874_P001 | Maize | cytosol, endoplasmic reticulum, nucleus | 34.21 | 33.46 |
| EES04310 | Sorghum | plasma membrane | 28.37 | 25.18 |
| Os04t0105100-01 | Rice | plasma membrane | 15.09 | 16.34 |
| TraesCS6B01G005200.1 | Wheat | cytosol, nucleus, plasma membrane | 14.08 | 15.35 |
| KRH19853 | Soybean | cytosol, peroxisome, plasma membrane | 10.46 | 10.34 |
| KRH67679 | Soybean | cytosol | 8.25 | 9.36 |
| Bra029787.1-P | Field mustard | nucleus | 8.45 | 9.19 |
| CDY41589 | Canola | nucleus | 8.25 | 9.01 |
| KRG95972 | Soybean | cytosol, nucleus, plasma membrane | 8.05 | 8.89 |
| VIT_08s0040g01950.t01 | Wine grape | cytosol, nucleus, plasma membrane | 9.05 | 8.72 |
| Bra029786.1-P | Field mustard | nucleus | 7.44 | 8.13 |
| CDY44728 | Canola | cytosol, nucleus, plasma membrane | 7.65 | 8.1 |
| CDY07939 | Canola | cytosol, nucleus, plasma membrane | 7.04 | 7.78 |
| CDY41588 | Canola | nucleus | 7.24 | 7.45 |
| CDX73994 | Canola | cytosol | 6.44 | 6.71 |
| Os02t0165000-01 | Rice | plasma membrane | 6.24 | 6.37 |
| Os06t0677300-01 | Rice | plasma membrane | 6.04 | 6.21 |
| AT5G03180.2 | Thale cress | nucleus | 2.41 | 2.58 |
Protein Annotations
| MapMan:19.2.2.1.5.3.4 | Gene3D:3.30.40.10 | EntrezGene:9266525 | EMBL:AK069001 | EMBL:AK121342 | ProteinID:BAD61541.1 |
| ProteinID:BAD61757.1 | ProteinID:BAH93499.1 | ProteinID:BAS97617.1 | ProteinID:EEE65652.1 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0008270 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0046872 | InterPro:IPR011016 |
| InterPro:IPR013083 | InterPro:MARCH-like | EnsemblPlantsGene:Os06g0340200 | EnsemblPlants:Os06t0340200-02 | PFAM:PF12906 | PFscan:PS51292 |
| PANTHER:PTHR23012 | PANTHER:PTHR23012:SF151 | UniProt:Q5Z887 | SMART:SM00744 | SUPFAM:SSF57850 | TMHMM:TMhelix |
| UniParc:UPI00004505C2 | RefSeq:XP_015644526.1 | InterPro:Znf_RING-CH | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : |
Description
Zinc finger, RING-CH-type domain containing protein. (Os06t0340200-01);Zinc finger, RING-CH-type domain containing protein. (Os06t0340200-02);Hypothetical conserved gene. (Os06t0340200-03)
Coordinates
chr6:-:13584735..13591960
Molecular Weight (calculated)
52464.2 Da
IEP (calculated)
8.168
GRAVY (calculated)
-0.045
Length
497 amino acids
Sequence
(BLAST)
(BLAST)
001: MAQQAKEVNT NRSRCGSSIS MRMEGDRNGA LAMLSISSSS ARYGNDHQEL ASAAAAFRES AGDPRKLSSG MSSRLLPARS MRSTGAGDDG EVAAAPVAGA
101: RSLSFSKLFS FRIANAARCS SSLDFDHPLP SDAASSDHIS ANDETTATKT KTKTKAKHAS DHMNISRSQS VPMSTLSRFS SKGGGGSKRV ADSSSLRIHD
201: GGSVRFRVSV IGASPPDGNA DAAAAAGEEE DDAGSVEAEE EALVCRICMV ALSEDGASGG GGGTLKLECR CKGELALAHG DCAVKWFSIK GNATCDVCNH
301: EVLNLPVTLR RVHDRQQLVY EAAAAAAAAA AAAAGDDIAG GNRRGGYSYG RVWRGTTILV IVSMLAYFCF LEQLLVGDHG TAALAISLPF ACVLGLFSSL
401: TTAKMVSRKY VWIYSAVQYL FIVLFTHLFY RYVRLQAVIA IILSTFAGFG VAICANAILL QIIRWRARRA SMSAAQEEEE ARRAPTQADL ENALPPP
101: RSLSFSKLFS FRIANAARCS SSLDFDHPLP SDAASSDHIS ANDETTATKT KTKTKAKHAS DHMNISRSQS VPMSTLSRFS SKGGGGSKRV ADSSSLRIHD
201: GGSVRFRVSV IGASPPDGNA DAAAAAGEEE DDAGSVEAEE EALVCRICMV ALSEDGASGG GGGTLKLECR CKGELALAHG DCAVKWFSIK GNATCDVCNH
301: EVLNLPVTLR RVHDRQQLVY EAAAAAAAAA AAAAGDDIAG GNRRGGYSYG RVWRGTTILV IVSMLAYFCF LEQLLVGDHG TAALAISLPF ACVLGLFSSL
401: TTAKMVSRKY VWIYSAVQYL FIVLFTHLFY RYVRLQAVIA IILSTFAGFG VAICANAILL QIIRWRARRA SMSAAQEEEE ARRAPTQADL ENALPPP
001: MATEEKPLNS LDLSHDDSSP ASNQAEGSSA ITEDTSANVQ QWRRKNLSLQ IPSRAAGLSP EDSVVIKMPP TPSPTPRRVN FALTSSSPGP TPTSSSVLPR
101: GKSSLKNLLP KAGCKPKTSN TDIEKGQGNA CSPPASQEKA SISRSLSLSK LFTPRIKRTS SLPVTPVILS NSESAHGGTS VAPQTPNRKG SVHIARSRSV
201: PLNDKELSLK GMDSFFRVIP STPRVKEGDV FSNASEAGNT ETGDADGEDI PEDEAVCRIC LVELCEGGET LKMECSCKGE LALAHKDCAL KWFTIKGNKT
301: CEVCKQEVKN LPVTLLRIQS LRNSGVPQLD VSGYRVWQEV PVLVIISMLA YFCFLEQLLV ENMGTGAIAI SLPFSCILGL LASMTASTMV MRRFVWIYAS
401: VQFALVVLFA HIFYSVVKLQ PVLSVLLSTF AGFGVCICGS SVMVEFVRWR RRWRARRLEQ QLNHALTLSQ PPQPLDPTTS LHHSNTS
101: GKSSLKNLLP KAGCKPKTSN TDIEKGQGNA CSPPASQEKA SISRSLSLSK LFTPRIKRTS SLPVTPVILS NSESAHGGTS VAPQTPNRKG SVHIARSRSV
201: PLNDKELSLK GMDSFFRVIP STPRVKEGDV FSNASEAGNT ETGDADGEDI PEDEAVCRIC LVELCEGGET LKMECSCKGE LALAHKDCAL KWFTIKGNKT
301: CEVCKQEVKN LPVTLLRIQS LRNSGVPQLD VSGYRVWQEV PVLVIISMLA YFCFLEQLLV ENMGTGAIAI SLPFSCILGL LASMTASTMV MRRFVWIYAS
401: VQFALVVLFA HIFYSVVKLQ PVLSVLLSTF AGFGVCICGS SVMVEFVRWR RRWRARRLEQ QLNHALTLSQ PPQPLDPTTS LHHSNTS
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4K0E2]
SUBAcon: [peroxisome,nucleus,cytosol]
SUBAcon: [peroxisome,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.