CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plastid 2
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 3
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d016874_P001	Maize	cytosol, endoplasmic reticulum, nucleus	28.39	31.3
Os06t0340200-02	Rice	cytosol, endoplasmic reticulum, peroxisome, plastid	25.18	28.37
EES10335	Sorghum	nucleus	15.89	17.18
TraesCS6B01G005200.1	Wheat	cytosol, nucleus, plasma membrane	11.61	14.25
CDY41589	Canola	nucleus	8.39	10.33
KRH19853	Soybean	cytosol, peroxisome, plasma membrane	8.93	9.94
Bra029787.1-P	Field mustard	nucleus	7.86	9.63
VIT_08s0040g01950.t01	Wine grape	cytosol, nucleus, plasma membrane	8.39	9.11
Bra029786.1-P	Field mustard	nucleus	7.32	9.01
KRH67679	Soybean	cytosol	6.96	8.9
CDY41588	Canola	nucleus	7.5	8.7
KRG95972	Soybean	cytosol, nucleus, plasma membrane	6.79	8.44
CDY44728	Canola	cytosol, nucleus, plasma membrane	6.96	8.32
CDY07939	Canola	cytosol, nucleus, plasma membrane	6.43	8.0
CDX73994	Canola	cytosol	6.61	7.76
EER88810	Sorghum	cytosol, nucleus, plasma membrane, plastid	5.18	6.0
AT5G03180.2	Thale cress	nucleus	2.14	2.58

Protein Annotations

MapMan:19.2.2.1.5.3.4	Gene3D:3.30.40.10	EntrezGene:8066464	UniProt:C5XRG1	ncoils:Coil	EnsemblPlants:EES04310
ProteinID:EES04310	ProteinID:EES04310.2	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0008270
GO:GO:0016020	GO:GO:0016021	GO:GO:0046872	InterPro:IPR011016	InterPro:IPR013083	InterPro:MARCH-like
PFAM:PF12906	PFscan:PS51292	PANTHER:PTHR23012	PANTHER:PTHR23012:SF151	SMART:SM00744	EnsemblPlantsGene:SORBI_3004G000300
SUPFAM:SSF57850	TMHMM:TMhelix	UniParc:UPI0007F290B4	InterPro:Znf_RING-CH	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

hypothetical protein

Coordinates

chr4:+:52403..54724

Molecular Weight (calculated)

60448.6 Da

IEP (calculated)

5.973

GRAVY (calculated)

-0.168

Length

560 amino acids

Sequence
(BLAST)

001: MLDAWFLLQL QLQSYQAVTA RAWIELATSS PASRDPGRIA MAHHKQSQGT VARADDSTSS LPMGDDGGLS MLEHGGTLSL LSVAADDQGQ EHQEEEEVDH
101: NDTSSSSSPT GNKHKQTSCL LPARSLRSTD DAASHSQQAG GGVRSLSLSK ILSFRMWAPA GASLSSSSST STLEDYIIDD DQHQLEHDAG AAKDKNKEEE
201: EEEEKLKQVC RSQSVPATSV ARRFSGTAKG KGSRRVADSS SSLTRLRVVP LRVPSPPPPL DQATTAGGEE EEEEQQQEEE DIAAEEAVCR ICMVALSEEA
301: VLKLECCCKG ELALAHRACA IKWFSIKGNG TCDVCSQEVL NLPVTLRLRR LPDEPAARRP PSVLQAALAL AQAHAQSTPQ GADDPIPTAT SRYSSSYRVW
401: HGTPILVIVS MLAYFCFLEQ LLVGDHGTAA LAISLPFACV LGLFSSLTTT KMVSRRYVWI YSAVQFLFIV LFTHIFYRYV RMQAVIAIIL STFAGFSVAV
501: CTNSALLQIL RWRPRHVVAS PTTAQGRHGS SSSRGPPVAM AVPVPMAEPD LEIAMPPAPA

Best Arabidopsis Sequence Match ( AT5G60580.3 )
(BLAST)

001: MATEEKPLNS LDLSHDDSSP ASNQAEGSSA ITEDTSANVQ QWRRKNLSLQ IPSRAAGLSP EDSVVIKMPP TPSPTPRRVN FALTSSSPGP TPTSSSVLPR
101: GKSSLKNLLP KAGCKPKTSN TDIEKGQGNA CSPPASQEKA SISRSLSLSK LFTPRIKRTS SLPVTPVILS NSESAHGGTS VAPQTPNRKG SVHIARSRSV
201: PLNDKELSLK GMDSFFRVIP STPRVKEGDV FSNASEAGNT ETGDADGEDI PEDEAVCRIC LVELCEGGET LKMECSCKGE LALAHKDCAL KWFTIKGNKT
301: CEVCKQEVKN LPVTLLRIQS LRNSGVPQLD VSGYRVWQEV PVLVIISMLA YFCFLEQLLV ENMGTGAIAI SLPFSCILGL LASMTASTMV MRRFVWIYAS
401: VQFALVVLFA HIFYSVVKLQ PVLSVLLSTF AGFGVCICGS SVMVEFVRWR RRWRARRLEQ QLNHALTLSQ PPQPLDPTTS LHHSNTS

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4K0E2]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.