CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY07939	Canola	cytosol, nucleus, plasma membrane	58.68	59.33
Bra029786.1-P	Field mustard	nucleus	48.79	48.79
CDY44727	Canola	cytosol	29.23	36.54
CDY44728	Canola	cytosol, nucleus, plasma membrane	34.73	33.69
CDX73994	Canola	cytosol	26.15	24.95
CDY41588	Canola	nucleus	26.15	24.64
KRH67679	Soybean	cytosol	19.12	19.86
KRG95972	Soybean	cytosol, nucleus, plasma membrane	18.24	18.44
CDY62901	Canola	cytosol	16.48	17.9
KRH19853	Soybean	cytosol, peroxisome, plasma membrane	19.56	17.69
CDY44346	Canola	cytosol	16.04	17.51
CDY69891	Canola	plasma membrane	6.59	16.13
VIT_08s0040g01950.t01	Wine grape	cytosol, nucleus, plasma membrane	17.36	15.31
CDY10383	Canola	cytosol, mitochondrion, peroxisome, plasma membrane	9.45	14.83
CDX70311	Canola	cytosol	9.89	14.66
CDY10402	Canola	mitochondrion	10.99	13.51
Os04t0105100-01	Rice	plasma membrane	10.11	10.02
EES10335	Sorghum	nucleus	10.11	8.88
Zm00001d024927_P002	Maize	cytosol	9.89	8.7
Zm00001d016874_P001	Maize	cytosol, endoplasmic reticulum, nucleus	9.67	8.66
TraesCS6B01G005200.1	Wheat	cytosol, nucleus, plasma membrane	8.57	8.55
EES04310	Sorghum	plasma membrane	10.33	8.39
Os06t0340200-02	Rice	cytosol, endoplasmic reticulum, peroxisome, plastid	9.01	8.25
CDY31533	Canola	cytosol, nucleus, plasma membrane	9.01	8.23
CDY09194	Canola	cytosol, peroxisome, plasma membrane	8.35	7.93
TraesCS2D01G037600.3	Wheat	plasma membrane	8.79	7.59
CDY67417	Canola	endoplasmic reticulum, plasma membrane	7.47	6.65
CDY24702	Canola	cytosol	4.84	4.98
CDY08057	Canola	cytosol, peroxisome, plasma membrane	4.18	4.35
CDX74109	Canola	cytosol, peroxisome, plasma membrane	3.74	3.89
CDY05254	Canola	cytosol	3.74	3.82
CDY02603	Canola	cytosol, peroxisome, plasma membrane	3.08	3.63
CDY47182	Canola	cytosol	3.08	3.58
CDY18852	Canola	cytosol	1.98	2.08

Protein Annotations

KEGG:00220+6.3.2.-	KEGG:00261+6.3.2.-	KEGG:00380+6.3.2.-	MapMan:19.2.2.1.5.3.4	Gene3D:3.30.40.10	GO:A0A078HW37
UniProt:A0A078HW37	EnsemblPlants:CDY41589	ProteinID:CDY41589	ProteinID:CDY41589.1	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0008270	GO:GO:0016020	GO:GO:0016021	GO:GO:0046872	EnsemblPlantsGene:GSBRNA2T00073236001
InterPro:IPR011016	InterPro:IPR013083	InterPro:MARCH-like	PFAM:PF12906	PFscan:PS51292	PANTHER:PTHR23012
PANTHER:PTHR23012:SF92	SMART:SM00744	SUPFAM:SSF57850	TMHMM:TMhelix	UniPathway:UPA00143	UniParc:UPI0004EDF36F
InterPro:Znf_RING-CH	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

BnaC05g43260DBnaC05g43260D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HW37]

Coordinates

chrLK032501:+:124867..127306

Molecular Weight (calculated)

50102.8 Da

IEP (calculated)

6.424

GRAVY (calculated)

-0.254

Length

455 amino acids

Sequence
(BLAST)

001: MDGRDKASEE EQHGVYLQPP PQRDGDSEEE ISQGRDLRVL DLLPTTTPPE DTGDDLLSYN TSLTSSPVAK RVNFSTLSSP RVGPSLSPSS SRNFTNNSLK
101: NLIPKPNKIN EVDIEKAAGL ALAFSGRDRS SWSLSNIFTP RRNKTESLPV TPIVHSNPGS THGGYVADPI TSIKKGPPLP FHRSRSVPAF NKDGSLRQSG
201: VFRVIPTPNM SPTRSLYKRN DTGVDGGEDV PEEEAVCRIC LVELGEDSEA FKMECMCRGE LALAHKECTI KWFTIKGNRT CDVCKQEVQN LPVTLLRMQD
301: SQGGAAEASH YSVWQDVPVL VIVSMLAYFC FLEQLLHTKM KSSAIAIALP FSCILGLLAS MTSTTMVEKQ YVWIYGTVQF GFIVCFSHIF FELVHMQPVV
401: SIVLATLVGF GLTMSGTTGL VEFLKWRRRQ RTAEPPSSSQ EDPPPVQTDQ SISVS

Best Arabidopsis Sequence Match ( AT3G09760.1 )
(BLAST)

001: MMDDKARKEE EHHVSHQHNH SPLQRDGNSA EIAQGQELSS PGRDLWRRGL VLDLPSTTPE DTTRDDLFRR NASLTSSPVA KRVNFSPMSS PRVGQRGASL
101: SPSSSTSSSS RNKPNSLKNL IPKLSFKNRN SNNDNVDIEK AADLGFVSSP SSGNGRDRST WTLTNILTPR LKKTESLPVT PIAHSNPEST HGRFAVDLVT
201: STKKGPPLPI HRSRSVPAFN KDGSQRQLGV FRVIPTPNMS PTRNTIKLND ANVDGAEDVP EEEAVCRICL VELGEDSEAF KMECLCRGEL ALAHKECTIK
301: WFTIKGNRTC DVCKQEVQNL PVTLLRMQNS RGSIGAPDAE AAHYSLWQDV PILVIVSMLA YFCFLEQLLL TKMQSGAIAV SLPFSCVLGL FASMTATTMV
401: PKRYVWIYAT TQFGLVVFFS HIFFTLVRMQ PVVAILLATI VGFGLTMSGT TGIVEFSKWR RSNRTAELPS SSQVDQPLVE TTDQNISGSR N

Arabidopsis Description

At3g09760/F8A24.19 [Source:UniProtKB/TrEMBL;Acc:Q940P1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.