Factsheet for Os04t0105100-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
plasma membrane 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES10335	Sorghum	nucleus	21.79	19.3
Zm00001d024927_P002	Maize	cytosol	21.35	18.96
TraesCS2D01G037600.3	Wheat	plasma membrane	21.57	18.79
Os06t0340200-02	Rice	cytosol, endoplasmic reticulum, peroxisome, plastid	16.34	15.09
VIT_08s0040g01950.t01	Wine grape	cytosol, nucleus, plasma membrane	12.85	11.43
CDY44728	Canola	cytosol, nucleus, plasma membrane	11.55	11.3
CDY41588	Canola	nucleus	11.55	10.97
Bra029787.1-P	Field mustard	nucleus	10.89	10.94
KRH19853	Soybean	cytosol, peroxisome, plasma membrane	11.33	10.34
CDY41589	Canola	nucleus	10.02	10.11
CDX73994	Canola	cytosol	10.46	10.06
Bra029786.1-P	Field mustard	nucleus	9.8	9.89
CDY07939	Canola	cytosol, nucleus, plasma membrane	9.15	9.33
KRH67679	Soybean	cytosol	8.71	9.13
KRG95972	Soybean	cytosol, nucleus, plasma membrane	8.93	9.11
Os06t0677300-01	Rice	plasma membrane	7.63	7.25
Os02t0165000-01	Rice	plasma membrane	6.54	6.16
AT5G03180.2	Thale cress	nucleus	1.74	1.72

Protein Annotations

MapMan:19.2.2.1.5.3.4	Gene3D:3.30.40.10	EntrezGene:4334905	EMBL:AK071063	EMBL:AK105914	ProteinID:BAF13920.1
ProteinID:BAS87528.1	ProteinID:CAD39346.2	ProteinID:CAE04603.1	ProteinID:EAZ29434.1	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0008270	GO:GO:0016020	GO:GO:0016021	GO:GO:0046872	InterPro:IPR011016
InterPro:IPR013083	InterPro:MARCH-like	EnsemblPlantsGene:Os04g0105100	EnsemblPlants:Os04t0105100-01	PFAM:PF12906	PFscan:PS51292
PANTHER:PTHR23012	PANTHER:PTHR23012:SF25	UniProt:Q7XXI7	SMART:SM00744	SUPFAM:SSF57850	TMHMM:TMhelix
UniParc:UPI00001B18AA	RefSeq:XP_015633715.1	InterPro:Znf_RING-CH	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os04t0105100-01)

Coordinates

chr4:+:333801..337060

Molecular Weight (calculated)

49925.2 Da

IEP (calculated)

9.288

GRAVY (calculated)

-0.079

Length

459 amino acids

Sequence
(BLAST)

001: MDQQLHLQGT STATTVPLQG DPASDHHPHL SIDIPPAAAS MSPAPTQAAA DITPTPTTSI LSTKASTPAG SCSSRSTSVA PKPQRSSSFM LRQTVKSLLP
101: VGSFKSSVKF FNARISRTSS LPVTDVSQEQ ADKTSTTHAV DKAGHMYRSQ SLPMNMKKLN NGKSFKRMNS LGGVYRVVPS TPSVPVTSSN VIPDIVPSEP
201: GDEDGEDIAE EEAVCRICMV ELSEGSDTLK LECSCKGELA LAHKHCAMKW FTMKGTRTCE VCKEDVQNLP VTLVRVQSMQ QPELQTNPAN ASRYDRLRMW
301: QGAPILVIVS ILAYFCFLEQ LLVARDGIAA LAISLPFSCI LGLFSSLTTT SMVARRYVWI YATIQFLFVV FFTHLFYRYL HLQAVISIIL ATFAGFGVGM
401: TGNSIIVEII RWRAARAAAA PPAQTRHRRR RHGRRQQQPP PAQPAASSAA VADVENPPV

Best Arabidopsis Sequence Match ( AT5G60580.3 )
(BLAST)

001: MATEEKPLNS LDLSHDDSSP ASNQAEGSSA ITEDTSANVQ QWRRKNLSLQ IPSRAAGLSP EDSVVIKMPP TPSPTPRRVN FALTSSSPGP TPTSSSVLPR
101: GKSSLKNLLP KAGCKPKTSN TDIEKGQGNA CSPPASQEKA SISRSLSLSK LFTPRIKRTS SLPVTPVILS NSESAHGGTS VAPQTPNRKG SVHIARSRSV
201: PLNDKELSLK GMDSFFRVIP STPRVKEGDV FSNASEAGNT ETGDADGEDI PEDEAVCRIC LVELCEGGET LKMECSCKGE LALAHKDCAL KWFTIKGNKT
301: CEVCKQEVKN LPVTLLRIQS LRNSGVPQLD VSGYRVWQEV PVLVIISMLA YFCFLEQLLV ENMGTGAIAI SLPFSCILGL LASMTASTMV MRRFVWIYAS
401: VQFALVVLFA HIFYSVVKLQ PVLSVLLSTF AGFGVCICGS SVMVEFVRWR RRWRARRLEQ QLNHALTLSQ PPQPLDPTTS LHHSNTS

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4K0E2]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.