Factsheet for Zm00001d024927_P002

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES10335	Sorghum	nucleus	35.2	35.14
TraesCS2D01G037600.3	Wheat	plasma membrane	29.4	28.84
Os04t0105100-01	Rice	plasma membrane	18.96	21.35
Zm00001d016874_P001	Maize	cytosol, endoplasmic reticulum, nucleus	16.83	17.13
VIT_08s0040g01950.t01	Wine grape	cytosol, nucleus, plasma membrane	11.8	11.82
KRH19853	Soybean	cytosol, peroxisome, plasma membrane	11.41	11.73
KRH67679	Soybean	cytosol	8.9	10.5
KRG95972	Soybean	cytosol, nucleus, plasma membrane	8.9	10.22
CDY41589	Canola	nucleus	8.7	9.89
CDX73994	Canola	cytosol	9.09	9.85
CDY07939	Canola	cytosol, nucleus, plasma membrane	8.51	9.78
Bra029786.1-P	Field mustard	nucleus	8.51	9.67
Bra029787.1-P	Field mustard	nucleus	7.93	8.97
CDY44728	Canola	cytosol, nucleus, plasma membrane	7.93	8.74
CDY41588	Canola	nucleus	7.93	8.49
Zm00001d014385_P001	Maize	cytosol, nucleus, plasma membrane, plastid	5.42	5.81
AT5G03180.2	Thale cress	nucleus	3.68	4.08

Protein Annotations

EntrezGene:100281740	MapMan:19.2.2.1.5.3.4	Gene3D:3.30.40.10	ProteinID:AQK42330.1	EMBL:BT063824	UniProt:C0P6A5
GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0008270	GO:GO:0016020	GO:GO:0016021
GO:GO:0046872	InterPro:IPR011016	InterPro:IPR013083	InterPro:MARCH-like	PFAM:PF12906	PFscan:PS51292
PANTHER:PTHR23012	PANTHER:PTHR23012:SF25	SMART:SM00744	SUPFAM:SSF57850	TMHMM:TMhelix	UniParc:UPI0001948B41
EnsemblPlantsGene:Zm00001d024927	EnsemblPlants:Zm00001d024927_P002	EnsemblPlants:Zm00001d024927_T002	InterPro:Znf_RING-CH	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

RING/U-box superfamily protein

Coordinates

chr10:-:95363452..95366568

Molecular Weight (calculated)

55726.1 Da

IEP (calculated)

9.925

GRAVY (calculated)

-0.156

Length

517 amino acids

Sequence
(BLAST)

001: MEKETPPPLH TDQETSVSSE QQRPRPHLSI DIPAASSLPA DHLLPMATAT QAGTSITPPS TRRGQQTSSN ILSTPAPSSS SSKPSSRPPL RSPSFMLRQT
101: VKSLLPLGSF KSSAVKSYEA SISKLFGASA TKVMARTPSL PLDHALSSSP HPPPVQQKSA ALHHMCRSQS LPTTTNMKKA KLLNAANAKS FKRMDSLGGT
201: FRVVPSTPRT PATAVPDDIA PAPPGGPGVD GGEDIPEEEA VCRICMAELS EGSDTLIKLE CACKGELALA HTDCAVKWFS IKGTRTCEVC KQDVQNLPVT
301: LLRVQSVQRR DLLNRGGASN TPRYDRYRMW HGTPILVIIS ILAYFCFLEE LLVAHDGIVA LAISLPFSCI LGLFSSLTTT SMVARRYVWI YAAAQFLLVV
401: FFTHLFYRYL HLQAVISIIL ATFAGFGVGM TGNSIAIEIL RWRARRVAPP TQQARRRRHR RPRAPQHQAP DLPASGSADQ TSSQPSAADM GMGIGAGQHH
501: VMATAAGDVE NPPVPQA

Best Arabidopsis Sequence Match ( AT5G60580.3 )
(BLAST)

001: MATEEKPLNS LDLSHDDSSP ASNQAEGSSA ITEDTSANVQ QWRRKNLSLQ IPSRAAGLSP EDSVVIKMPP TPSPTPRRVN FALTSSSPGP TPTSSSVLPR
101: GKSSLKNLLP KAGCKPKTSN TDIEKGQGNA CSPPASQEKA SISRSLSLSK LFTPRIKRTS SLPVTPVILS NSESAHGGTS VAPQTPNRKG SVHIARSRSV
201: PLNDKELSLK GMDSFFRVIP STPRVKEGDV FSNASEAGNT ETGDADGEDI PEDEAVCRIC LVELCEGGET LKMECSCKGE LALAHKDCAL KWFTIKGNKT
301: CEVCKQEVKN LPVTLLRIQS LRNSGVPQLD VSGYRVWQEV PVLVIISMLA YFCFLEQLLV ENMGTGAIAI SLPFSCILGL LASMTASTMV MRRFVWIYAS
401: VQFALVVLFA HIFYSVVKLQ PVLSVLLSTF AGFGVCICGS SVMVEFVRWR RRWRARRLEQ QLNHALTLSQ PPQPLDPTTS LHHSNTS

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4K0E2]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.