CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d024927_P002	Maize	cytosol	35.14	35.2
TraesCS2D01G037600.3	Wheat	plasma membrane	25.68	25.24
Os04t0105100-01	Rice	plasma membrane	19.3	21.79
EES04310	Sorghum	plasma membrane	17.18	15.89
KRH19853	Soybean	cytosol, peroxisome, plasma membrane	11.58	11.93
VIT_08s0040g01950.t01	Wine grape	cytosol, nucleus, plasma membrane	11.0	11.05
KRH67679	Soybean	cytosol	9.27	10.96
CDY07939	Canola	cytosol, nucleus, plasma membrane	9.07	10.44
KRG95972	Soybean	cytosol, nucleus, plasma membrane	8.88	10.22
CDY41589	Canola	nucleus	8.88	10.11
CDX73994	Canola	cytosol	9.27	10.06
Bra029786.1-P	Field mustard	nucleus	8.3	9.45
Bra029787.1-P	Field mustard	nucleus	8.11	9.19
CDY44728	Canola	cytosol, nucleus, plasma membrane	8.3	9.17
CDY41588	Canola	nucleus	8.49	9.11
EER88810	Sorghum	cytosol, nucleus, plasma membrane, plastid	6.37	6.83
AT5G03180.2	Thale cress	nucleus	3.47	3.86

Protein Annotations

MapMan:19.2.2.1.5.3.4	Gene3D:3.30.40.10	EntrezGene:8056949	UniProt:C5YB96	EnsemblPlants:EES10335	ProteinID:EES10335
ProteinID:EES10335.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0008270	GO:GO:0016020
GO:GO:0016021	GO:GO:0046872	InterPro:IPR011016	InterPro:IPR013083	InterPro:MARCH-like	PFAM:PF12906
PFscan:PS51292	PANTHER:PTHR23012	PANTHER:PTHR23012:SF25	SMART:SM00744	EnsemblPlantsGene:SORBI_3006G002900	SUPFAM:SSF57850
unigene:Sbi.20584	TMHMM:TMhelix	UniParc:UPI0001A86B96	RefSeq:XP_002446007.1	InterPro:Znf_RING-CH	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:+:484009..487940

Molecular Weight (calculated)

55882.9 Da

IEP (calculated)

8.746

GRAVY (calculated)

-0.225

Length

518 amino acids

Sequence
(BLAST)

001: MEKKETPPMH SRDLQDEATA ASVVSSEQRP RPHLCIDIPA EDHLPTPTHG GMSIITTPPS TRRGQQQTSS NIATTPVSSS SSSRPSRPPL RSPSFMLRQT
101: VKSLLPAGSF KSSAVSKLFS SGATKTKVMA RTSSLPLDDA LSSSQPQPQP PIQQKPGGAA AAAAAVHHIC RSQSLPMNMK KLNNGKSFKR MDSLGGMYRV
201: VPSMTRTTPA VVPDIVPSDS GTTGGEDHDD DGGGGEDIPE EEAVCRICMV ELSEGSETLI KLECSCKGEL ALAHRDCAVK WFSIKGTRTC EVCKQDVQNL
301: PVTLLRVQSI QQRDHPNRGG GSTPRYDRYR VWHGTPILVI ISILAYFCFL EELLVAHDGI AALAISLPFS CILGLFSSLT TTSMVARRYV WIYAAVQFLL
401: VVFFTHLFYR YLHLQAVISI ILATFAGFGV GMTGNSIAIE ILRWRARRVA PPTQQQARRH RRARAPPQQQ QAAPASDSDH QPSSQPSAAD VGVGVGVGQH
501: DAMAAAGDVE NPPVPQAA

Best Arabidopsis Sequence Match ( AT5G60580.3 )
(BLAST)

001: MATEEKPLNS LDLSHDDSSP ASNQAEGSSA ITEDTSANVQ QWRRKNLSLQ IPSRAAGLSP EDSVVIKMPP TPSPTPRRVN FALTSSSPGP TPTSSSVLPR
101: GKSSLKNLLP KAGCKPKTSN TDIEKGQGNA CSPPASQEKA SISRSLSLSK LFTPRIKRTS SLPVTPVILS NSESAHGGTS VAPQTPNRKG SVHIARSRSV
201: PLNDKELSLK GMDSFFRVIP STPRVKEGDV FSNASEAGNT ETGDADGEDI PEDEAVCRIC LVELCEGGET LKMECSCKGE LALAHKDCAL KWFTIKGNKT
301: CEVCKQEVKN LPVTLLRIQS LRNSGVPQLD VSGYRVWQEV PVLVIISMLA YFCFLEQLLV ENMGTGAIAI SLPFSCILGL LASMTASTMV MRRFVWIYAS
401: VQFALVVLFA HIFYSVVKLQ PVLSVLLSTF AGFGVCICGS SVMVEFVRWR RRWRARRLEQ QLNHALTLSQ PPQPLDPTTS LHHSNTS

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4K0E2]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.