CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY44728	Canola	cytosol, nucleus, plasma membrane	46.38	47.76
Bra029787.1-P	Field mustard	nucleus	44.31	46.83
CDY07939	Canola	cytosol, nucleus, plasma membrane	33.54	36.0
CDX73994	Canola	cytosol	33.75	34.17
CDY41589	Canola	nucleus	24.64	26.15
VIT_08s0040g01950.t01	Wine grape	cytosol, nucleus, plasma membrane	19.25	18.02
KRG95972	Soybean	cytosol, nucleus, plasma membrane	16.77	18.0
KRH67679	Soybean	cytosol	16.15	17.81
CDY10402	Canola	mitochondrion	13.04	17.03
KRH19853	Soybean	cytosol, peroxisome, plasma membrane	17.6	16.9
CDY69891	Canola	plasma membrane	6.42	16.67
CDY10383	Canola	cytosol, mitochondrion, peroxisome, plasma membrane	7.87	13.1
CDX70311	Canola	cytosol	8.28	13.03
CDY62901	Canola	cytosol	10.56	12.17
CDY44346	Canola	cytosol	10.35	11.99
Os04t0105100-01	Rice	plasma membrane	10.97	11.55
CDY44727	Canola	cytosol	6.83	9.07
TraesCS6B01G005200.1	Wheat	cytosol, nucleus, plasma membrane	8.49	8.99
TraesCS2D01G037600.3	Wheat	plasma membrane	9.52	8.73
EES10335	Sorghum	nucleus	9.11	8.49
Zm00001d024927_P002	Maize	cytosol	8.49	7.93
Zm00001d016874_P001	Maize	cytosol, endoplasmic reticulum, nucleus	8.07	7.68
EES04310	Sorghum	plasma membrane	8.7	7.5
Os06t0340200-02	Rice	cytosol, endoplasmic reticulum, peroxisome, plastid	7.45	7.24
CDY67417	Canola	endoplasmic reticulum, plasma membrane	6.42	6.07
CDY31533	Canola	cytosol, nucleus, plasma membrane	6.21	6.02
CDY09194	Canola	cytosol, peroxisome, plasma membrane	4.97	5.01
CDY02603	Canola	cytosol, peroxisome, plasma membrane	2.9	3.63
CDY24702	Canola	cytosol	3.31	3.62
CDY47182	Canola	cytosol	2.9	3.58
CDY08057	Canola	cytosol, peroxisome, plasma membrane	3.11	3.43
CDY05254	Canola	cytosol	2.9	3.15
CDY18852	Canola	cytosol	2.48	2.77
CDX74109	Canola	cytosol, peroxisome, plasma membrane	2.28	2.52

Protein Annotations

KEGG:00220+6.3.2.-	KEGG:00261+6.3.2.-	KEGG:00380+6.3.2.-	MapMan:19.2.2.1.5.3.4	Gene3D:3.30.40.10	GO:A0A078HXY4
UniProt:A0A078HXY4	EnsemblPlants:CDY41588	ProteinID:CDY41588	ProteinID:CDY41588.1	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0008270	GO:GO:0016020	GO:GO:0016021	GO:GO:0046872	EnsemblPlantsGene:GSBRNA2T00073235001
InterPro:IPR011016	InterPro:IPR013083	InterPro:MARCH-like	PFAM:PF12906	PFscan:PS51292	PANTHER:PTHR23012
PANTHER:PTHR23012:SF92	SMART:SM00744	SUPFAM:SSF57850	TMHMM:TMhelix	UniPathway:UPA00143	UniParc:UPI0004EF0E63
InterPro:Znf_RING-CH	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

BnaC05g43250DBnaC05g43250D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HXY4]

Coordinates

chrLK032501:+:103067..105823

Molecular Weight (calculated)

53609.4 Da

IEP (calculated)

9.615

GRAVY (calculated)

-0.340

Length

483 amino acids

Sequence
(BLAST)

001: MDDRVRPREE EHKSPSLHDH NSPPQRDGDY AEIAEEEQLW RRGIVSSRTP QDTGDDLLRR NASLTSSPIA KRVNFSPMPS PRIGQRGASL SPCSSSSRNR
101: PNNSLKNLIP KLTFKNKNSN NSNMDIEKAA DLSFGASPPS SGNGRGRSTW TLGNILTPRL KKTESLPVTP IAHSNPGSTH GRYVVDQVAS MKKGPPLHIH
201: RSRSVPAFNK DGSLRQSGVF RVIPTPDMTP TRNINKLNDT NVDGGEDVPE EEAVCRICLV ELGEDSEAFK MECMCRGELA LAHKECTIKW FTIKGNRTCD
301: VCKQEVQNLP VTLLRMQDSH FNLGATEATL FRQVKSKQIP HSMVWQDVPI LVIVSMLAYF CFLQQLLLTK MKSGAIAISL PFSCVFGLLA SMTSTTMVKK
401: QYVWIYGTIQ FGLVVFFSHI FFSLVHMQPV LSILLATVVG FGLTMSGATG IVEFSKWRRR RRTAELPSSS QADPPPVQSI SES

Best Arabidopsis Sequence Match ( AT3G09760.1 )
(BLAST)

001: MMDDKARKEE EHHVSHQHNH SPLQRDGNSA EIAQGQELSS PGRDLWRRGL VLDLPSTTPE DTTRDDLFRR NASLTSSPVA KRVNFSPMSS PRVGQRGASL
101: SPSSSTSSSS RNKPNSLKNL IPKLSFKNRN SNNDNVDIEK AADLGFVSSP SSGNGRDRST WTLTNILTPR LKKTESLPVT PIAHSNPEST HGRFAVDLVT
201: STKKGPPLPI HRSRSVPAFN KDGSQRQLGV FRVIPTPNMS PTRNTIKLND ANVDGAEDVP EEEAVCRICL VELGEDSEAF KMECLCRGEL ALAHKECTIK
301: WFTIKGNRTC DVCKQEVQNL PVTLLRMQNS RGSIGAPDAE AAHYSLWQDV PILVIVSMLA YFCFLEQLLL TKMQSGAIAV SLPFSCVLGL FASMTATTMV
401: PKRYVWIYAT TQFGLVVFFS HIFFTLVRMQ PVVAILLATI VGFGLTMSGT TGIVEFSKWR RSNRTAELPS SSQVDQPLVE TTDQNISGSR N

Arabidopsis Description

At3g09760/F8A24.19 [Source:UniProtKB/TrEMBL;Acc:Q940P1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.