CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra023691.1-P	Field mustard	cytosol	100.0	100.0
CDY02603	Canola	cytosol, peroxisome, plasma membrane	82.86	83.94
AT5G18760.1	Thale cress	plastid	64.19	61.07
GSMUA_Achr1P11310_001	Banana	cytosol, nucleus, plasma membrane	17.14	15.95
CDY69891	Canola	plasma membrane	7.16	15.05
CDY18852	Canola	cytosol	10.23	9.24
KRH20994	Soybean	cytosol	6.91	8.79
CDY05254	Canola	cytosol	9.46	8.31
CDY24702	Canola	cytosol	9.21	8.14
CDX74109	Canola	cytosol, peroxisome, plasma membrane	8.18	7.32
CDY08057	Canola	cytosol, peroxisome, plasma membrane	7.93	7.09
PGSC0003DMT400002463	Potato	plasma membrane	1.53	3.31
CDY41589	Canola	nucleus	3.58	3.08
CDY41588	Canola	nucleus	3.58	2.9
CDY44346	Canola	cytosol	2.81	2.64
CDX70311	Canola	cytosol	2.05	2.61
CDY44728	Canola	cytosol, nucleus, plasma membrane	3.07	2.56
CDY62901	Canola	cytosol	2.56	2.39
CDY31533	Canola	cytosol, nucleus, plasma membrane	2.81	2.21
CDX73994	Canola	cytosol	2.56	2.1
CDY09194	Canola	cytosol, peroxisome, plasma membrane	2.56	2.09
Solyc06g016770.2.1	Tomato	cytosol, nucleus, plasma membrane	2.3	1.79
CDY07939	Canola	cytosol, nucleus, plasma membrane	2.05	1.78
CDY10383	Canola	cytosol, mitochondrion, peroxisome, plasma membrane	1.28	1.72
PGSC0003DMT400002459	Potato	plastid	1.02	1.53
PGSC0003DMT400074985	Potato	cytosol, nucleus, plasma membrane	1.79	1.4
CDY44727	Canola	cytosol	1.28	1.37
CDY67417	Canola	endoplasmic reticulum, plasma membrane	1.79	1.37
CDY10402	Canola	mitochondrion	1.28	1.35

Protein Annotations

KEGG:00220+6.3.2.-	KEGG:00261+6.3.2.-	KEGG:00380+6.3.2.-	MapMan:19.2.2.1.5.3.4	Gene3D:3.30.40.10	GO:A0A078IAJ8
UniProt:A0A078IAJ8	EnsemblPlants:CDY47182	ProteinID:CDY47182	ProteinID:CDY47182.1	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0008270	GO:GO:0016020	GO:GO:0016021	GO:GO:0046872	EnsemblPlantsGene:GSBRNA2T00086886001
InterPro:IPR011016	InterPro:IPR013083	InterPro:MARCH-like	PFAM:PF12906	PFscan:PS51292	PANTHER:PTHR23012
PANTHER:PTHR23012:SF84	SMART:SM00744	SUPFAM:SSF57850	TMHMM:TMhelix	UniPathway:UPA00143	UniParc:UPI0002543207
InterPro:Znf_RING-CH	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

BnaAnng08520DBnaAnng08520D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IAJ8]

Coordinates

chrLK032702:-:16931..19099

Molecular Weight (calculated)

43215.2 Da

IEP (calculated)

8.006

GRAVY (calculated)

-0.004

Length

391 amino acids

Sequence
(BLAST)

001: MQDSPPSSQV KEDVTRSQPN KTQSDASIHK LPNPMPIGIL RNLSLKRKAS LPNYEKRLLL SPTVSEASEK PNSSVASLPY WKRCLSLPSS TNAANKLSLA
101: TSTPQASPLG HTDQSTSNRD GASVSRSLSM PGRNKVIVRA VSFDNSSKQH VSNEASGSGS ADEITPVSAE ETEEEIPEEE AVCRICLDVC EEGNTLKMEC
201: SCKGDLRLVH EHCAIKWFST KGTRICDVCR QEVRNLPVIL LRVPTINQLT TRRELTQQNP QPQSISVGQE FVVLVLISTV CYFFFLEHLL IRDLKSQAIF
301: VAAPFSFTLA LLASTFAVVL AIREYMWTYA ALEFALVALL VHLLYVTFGL PVVYSMLFAG ILGFGMAMCL NQLYICYASR LVRVPQNRNL V

Best Arabidopsis Sequence Match ( AT5G18760.1 )
(BLAST)

001: MMEGSSIQPP RNFVLAKDSS TGSSSSSSSS QVKEQSVEDV SRSQPSGSQL DVSIQIPPKP TPSLGILRNL SLKRKASLPN YERRLLLSPS VSETSEKPLV
101: ASPITSPYWK RCLSLPSSNS AKLSLVVSTT PVSAVVHSEQ PKSNKDGLHA SVSRSLSMNR VIVRAVSFDD NKNHISNEAN GDQITPVPAE ETEEEIPEEE
201: AVCRICLDVC EEGNTLKMEC SCKGDLRLVH EHCAIKWFST KGTRICDVCR QEVRNLPVIL LRVPTINQLT NRRELTQQSS EPQSISVGQE FVVLVLISTV
301: CYFFFLEHLL IRDLNSQAIF VAAPFSFTLA LLASTFAVIL AIREYIWTYA ALEFALVALL VHLLYATLRV PVIYAMLFAG ILGFGMAMCL NLLCICYSSR
401: PVRFPRNTNL V

Arabidopsis Description

At5g18760 [Source:UniProtKB/TrEMBL;Acc:Q1H5A5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.