CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plasma membrane
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra029787.1-P	Field mustard	nucleus	63.33	64.99
CDY41588	Canola	nucleus	47.76	46.38
CDY07939	Canola	cytosol, nucleus, plasma membrane	42.43	44.22
CDY41589	Canola	nucleus	33.69	34.73
CDX73994	Canola	cytosol	29.0	28.51
KRH67679	Soybean	cytosol	18.12	19.41
KRG95972	Soybean	cytosol, nucleus, plasma membrane	17.91	18.67
CDY44727	Canola	cytosol	14.29	18.41
VIT_08s0040g01950.t01	Wine grape	cytosol, nucleus, plasma membrane	19.19	17.44
KRH19853	Soybean	cytosol, peroxisome, plasma membrane	18.12	16.9
CDY10383	Canola	cytosol, mitochondrion, peroxisome, plasma membrane	10.02	16.21
CDY69891	Canola	plasma membrane	6.4	16.13
CDY44346	Canola	cytosol	14.07	15.83
CDY62901	Canola	cytosol	14.07	15.75
CDX70311	Canola	cytosol	9.81	14.98
CDY10402	Canola	mitochondrion	9.59	12.16
Os04t0105100-01	Rice	plasma membrane	11.3	11.55
Zm00001d016874_P001	Maize	cytosol, endoplasmic reticulum, nucleus	9.59	8.86
TraesCS2D01G037600.3	Wheat	plasma membrane	9.81	8.73
TraesCS6B01G005200.1	Wheat	cytosol, nucleus, plasma membrane	8.1	8.33
EES10335	Sorghum	nucleus	9.17	8.3
Zm00001d024927_P002	Maize	cytosol	8.74	7.93
Os06t0340200-02	Rice	cytosol, endoplasmic reticulum, peroxisome, plastid	8.1	7.65
EES04310	Sorghum	plasma membrane	8.32	6.96
CDY67417	Canola	endoplasmic reticulum, plasma membrane	5.12	4.7
CDY09194	Canola	cytosol, peroxisome, plasma membrane	4.69	4.59
CDY24702	Canola	cytosol	4.26	4.52
CDY08057	Canola	cytosol, peroxisome, plasma membrane	4.05	4.35
CDX74109	Canola	cytosol, peroxisome, plasma membrane	3.2	3.43
CDY31533	Canola	cytosol, nucleus, plasma membrane	3.62	3.41
CDY02603	Canola	cytosol, peroxisome, plasma membrane	2.77	3.37
CDY05254	Canola	cytosol	2.99	3.15
CDY47182	Canola	cytosol	2.56	3.07
CDY18852	Canola	cytosol	2.77	3.0

Protein Annotations

KEGG:00220+6.3.2.-	KEGG:00261+6.3.2.-	KEGG:00380+6.3.2.-	MapMan:19.2.2.1.5.3.4	Gene3D:3.30.40.10	GO:A0A078I6I3
UniProt:A0A078I6I3	EnsemblPlants:CDY44728	ProteinID:CDY44728	ProteinID:CDY44728.1	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0008270	GO:GO:0016020	GO:GO:0016021	GO:GO:0046872	EnsemblPlantsGene:GSBRNA2T00080707001
InterPro:IPR011016	InterPro:IPR013083	InterPro:MARCH-like	PFAM:PF12906	PFscan:PS51292	PANTHER:PTHR23012
PANTHER:PTHR23012:SF92	SMART:SM00744	SUPFAM:SSF57850	TMHMM:TMhelix	UniPathway:UPA00143	UniParc:UPI0004EDD38F
InterPro:Znf_RING-CH	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

BnaA05g28780DBnaA05g28780D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I6I3]

Coordinates

chrLK032599:-:212774..215290

Molecular Weight (calculated)

52064.6 Da

IEP (calculated)

8.994

GRAVY (calculated)

-0.233

Length

469 amino acids

Sequence
(BLAST)

001: MDDRDKALEE EHKDGDYAEI AEEEQLWRRG IVSSRAPQDT GDDLMRRNAS LTSSPIGKRV NFSPMPSPRI FQRGASLSPC SSSSRNRPNN SLKSLIPKLT
101: FKNKNSSNSN MDIEKAADLA FGASPPSSGN ARERSTWTLS NILTPRLKKT ESLPVTPIAH SNPGSTHGRY VVDQVASMKK RPPLPFHRSR SVPAFNKDGS
201: LRQSGVFRVI PTPNMTPTRN INKLDDTNVD GGEDVPEEEA VCRICMVELG EDSEAFKMEC MCRGELALAH KECTIKWFTI KGNRTCDVCK QEVQNLPVTL
301: LRMQDSHFNF GATEASHFRQ AVTLVLFSSV WQDVPILVIV SMLAYFCFLE QLLLTKMKSG AIAISLPFSC VFGLLASMTS TTMVKKQYVW IYGTIQFGLV
401: VFFSHIFFSL VHMQPVVSIL LATVVGFGLT MSGATGIVEF SKWRRRRRTA ELPSSSQVDP PPVQSISGS

Best Arabidopsis Sequence Match ( AT3G09760.1 )
(BLAST)

001: MMDDKARKEE EHHVSHQHNH SPLQRDGNSA EIAQGQELSS PGRDLWRRGL VLDLPSTTPE DTTRDDLFRR NASLTSSPVA KRVNFSPMSS PRVGQRGASL
101: SPSSSTSSSS RNKPNSLKNL IPKLSFKNRN SNNDNVDIEK AADLGFVSSP SSGNGRDRST WTLTNILTPR LKKTESLPVT PIAHSNPEST HGRFAVDLVT
201: STKKGPPLPI HRSRSVPAFN KDGSQRQLGV FRVIPTPNMS PTRNTIKLND ANVDGAEDVP EEEAVCRICL VELGEDSEAF KMECLCRGEL ALAHKECTIK
301: WFTIKGNRTC DVCKQEVQNL PVTLLRMQNS RGSIGAPDAE AAHYSLWQDV PILVIVSMLA YFCFLEQLLL TKMQSGAIAV SLPFSCVLGL FASMTATTMV
401: PKRYVWIYAT TQFGLVVFFS HIFFTLVRMQ PVVAILLATI VGFGLTMSGT TGIVEFSKWR RSNRTAELPS SSQVDQPLVE TTDQNISGSR N

Arabidopsis Description

At3g09760/F8A24.19 [Source:UniProtKB/TrEMBL;Acc:Q940P1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.