Factsheet for VIT_08s0040g01950.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG95972	Soybean	cytosol, nucleus, plasma membrane	22.87	26.22
KRH67679	Soybean	cytosol	21.71	25.57
KRH19853	Soybean	cytosol, peroxisome, plasma membrane	22.29	22.86
CDY41588	Canola	nucleus	18.02	19.25
CDY44728	Canola	cytosol, nucleus, plasma membrane	17.44	19.19
Bra029787.1-P	Field mustard	nucleus	16.67	18.82
Bra029786.1-P	Field mustard	nucleus	16.47	18.68
CDY07939	Canola	cytosol, nucleus, plasma membrane	16.09	18.44
CDX73994	Canola	cytosol	16.67	18.03
CDY41589	Canola	nucleus	15.31	17.36
Os04t0105100-01	Rice	plasma membrane	11.43	12.85
Zm00001d024927_P002	Maize	cytosol	11.82	11.8
TraesCS2D01G037600.3	Wheat	plasma membrane	11.24	11.01
EES10335	Sorghum	nucleus	11.05	11.0
VIT_06s0004g02930.t01	Wine grape	cytosol, peroxisome, plasma membrane	9.11	9.48
Os06t0340200-02	Rice	cytosol, endoplasmic reticulum, peroxisome, plastid	8.72	9.05
Zm00001d016874_P001	Maize	cytosol, endoplasmic reticulum, nucleus	8.72	8.86
EES04310	Sorghum	plasma membrane	9.11	8.39
TraesCS6B01G005200.1	Wheat	cytosol, nucleus, plasma membrane	6.78	7.68
AT5G03180.2	Thale cress	nucleus	6.01	6.65
VIT_12s0028g01200.t01	Wine grape	cytosol, endoplasmic reticulum, peroxisome	6.4	6.32
VIT_05s0020g02080.t01	Wine grape	cytosol	3.88	4.66
VIT_12s0034g00630.t01	Wine grape	cytosol, nucleus	0.0	0.0

Protein Annotations

EntrezGene:100265508	wikigene:100265508	MapMan:19.2.2.1.5.3.4	Gene3D:3.30.40.10	ProteinID:CBI32724	ProteinID:CBI32724.3
UniProt:D7TQK4	EMBL:FN596008	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0008270
GO:GO:0016020	GO:GO:0016021	GO:GO:0046872	InterPro:IPR011016	InterPro:IPR013083	InterPro:IPR020846
EntrezGene:LOC100265508	wikigene:LOC100265508	InterPro:MARCH-like	InterPro:MFS_dom	PFAM:PF12906	PFscan:PS51292
PANTHER:PTHR23012	PANTHER:PTHR23012:SF92	SMART:SM00744	SUPFAM:SSF57850	TIGR:TC65259	TMHMM:TMhelix
UniParc:UPI0001BE3EBE	ArrayExpress:VIT_08s0040g01950	EnsemblPlantsGene:VIT_08s0040g01950	EnsemblPlants:VIT_08s0040g01950.t01	RefSeq:XP_002280929	RefSeq:XP_002280929.2
InterPro:Znf_RING-CH	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr8:+:13035091..13039972

Molecular Weight (calculated)

55856.9 Da

IEP (calculated)

7.903

GRAVY (calculated)

-0.197

Length

516 amino acids

Sequence
(BLAST)

001: MGAEEESSVG VGNNGGACNN TLDPPIQKVG ISSEIMEEAP RGQQQRHQNL ILEIPSRTHE GSTEDFVRIN MPPTPNSTPK RVNFSPMPSP SYTKINVSPG
101: PSPSKGRSSI KSLLPKLSFK YRSSTSEIEK AAILALGASS TGTREKPLTP RTSSLTKLFT PKMKRTSSLP VSPIAHSNPE SMHGGNTIDL LDSAKGGSLL
201: PIHRSHSVPV INKDESIRQM DSLGGVFRVV PTTPRVAEVT VATAIASPTV DAGGNDDDGE DIPEEEAVCR ICMIELGEGA DTLKMECSCK GELALAHQEC
301: AVKWFSIKGN KTCDVCKQEV QNLPVTLLRI QNAQALNLQG NRGRQAEATG YRVWQDVPVL VIVSMLAYFC FLEQLLVRKM GSSAIAISLP FSCILGLLAS
401: MTSTTLVRRR YVWVYASIQF GLVVFFAHIF YSLFHVQAVL SVLLATFAGF GVTMCGNSFV VEFLKWRRRW LAGSDQQHSS QEVTQMDGSP GTANPPQTGS
501: PHHETEMGNS GNPRGS

Best Arabidopsis Sequence Match ( AT5G60580.3 )
(BLAST)

001: MATEEKPLNS LDLSHDDSSP ASNQAEGSSA ITEDTSANVQ QWRRKNLSLQ IPSRAAGLSP EDSVVIKMPP TPSPTPRRVN FALTSSSPGP TPTSSSVLPR
101: GKSSLKNLLP KAGCKPKTSN TDIEKGQGNA CSPPASQEKA SISRSLSLSK LFTPRIKRTS SLPVTPVILS NSESAHGGTS VAPQTPNRKG SVHIARSRSV
201: PLNDKELSLK GMDSFFRVIP STPRVKEGDV FSNASEAGNT ETGDADGEDI PEDEAVCRIC LVELCEGGET LKMECSCKGE LALAHKDCAL KWFTIKGNKT
301: CEVCKQEVKN LPVTLLRIQS LRNSGVPQLD VSGYRVWQEV PVLVIISMLA YFCFLEQLLV ENMGTGAIAI SLPFSCILGL LASMTASTMV MRRFVWIYAS
401: VQFALVVLFA HIFYSVVKLQ PVLSVLLSTF AGFGVCICGS SVMVEFVRWR RRWRARRLEQ QLNHALTLSQ PPQPLDPTTS LHHSNTS

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4K0E2]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.