Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 4
- endoplasmic reticulum 5
- vacuole 4
- plasma membrane 6
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d024927_P002 | Maize | cytosol | 28.84 | 29.4 |
| EES10335 | Sorghum | nucleus | 25.24 | 25.68 |
| Os04t0105100-01 | Rice | plasma membrane | 18.79 | 21.57 |
| VIT_08s0040g01950.t01 | Wine grape | cytosol, nucleus, plasma membrane | 11.01 | 11.24 |
| KRH19853 | Soybean | cytosol, peroxisome, plasma membrane | 10.63 | 11.13 |
| CDY07939 | Canola | cytosol, nucleus, plasma membrane | 9.3 | 10.89 |
| CDX73994 | Canola | cytosol | 9.68 | 10.69 |
| Bra029787.1-P | Field mustard | nucleus | 8.73 | 10.07 |
| KRG95972 | Soybean | cytosol, nucleus, plasma membrane | 8.54 | 10.0 |
| CDY44728 | Canola | cytosol, nucleus, plasma membrane | 8.73 | 9.81 |
| KRH67679 | Soybean | cytosol | 7.97 | 9.59 |
| CDY41588 | Canola | nucleus | 8.73 | 9.52 |
| CDY41589 | Canola | nucleus | 7.59 | 8.79 |
| Bra029786.1-P | Field mustard | nucleus | 7.4 | 8.57 |
| TraesCS6D01G005100.1 | Wheat | plasma membrane | 7.4 | 8.35 |
| TraesCS7D01G451000.1 | Wheat | cytosol, nucleus, plasma membrane | 5.31 | 5.77 |
| AT5G03180.2 | Thale cress | nucleus | 3.04 | 3.43 |
Protein Annotations
| EnsemblPlants:TraesCS2D01G037600.3 | EnsemblPlantsGene:TraesCS2D01G037600 | Gene3D:3.30.40.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0008270 |
| InterPro:IPR011016 | InterPro:IPR013083 | InterPro:MARCH-like | InterPro:Znf_RING-CH | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR23012 |
| PANTHER:PTHR23012:SF25 | PFAM:PF12906 | PFscan:PS51292 | SEG:seg | SignalP:SignalP-noTM | SMART:SM00744 |
| SUPFAM:SSF57850 | TIGR:cd16495 | TMHMM:TMhelix | MapMan:19.2.2.1.5.3.4 | : | : |
Description
No Description!
Coordinates
chr2D:-:13895337..13898188
Molecular Weight (calculated)
55932.3 Da
IEP (calculated)
8.825
GRAVY (calculated)
-0.046
Length
527 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSPRMEQVT CLLLLLRIQL IPSCSSFRVL LPLSCCQRPG FSEPESSSTT ITNPMQGGGG GGGGGPAPDD QRPKRPPHLS IDIPAASSVP LTPTAAAEAE
101: AVAATPGSNA SRTPGSGSGP GKPPAPQRTP SFMLRQTVRS LLPGGGSFKS SVRDYEASLS RLFSGRIART SSLPAVDHAL AASVHAADKT PPSAPAAAAD
201: NKTGMHRSQS LPMNMKKFSS AKSIKRMNSL GGVYRVVPST PRAPAATSNA VPDIVPTEPG AGEGEDDHGE DIAEEEAVCR ICMVELSEGG GAMKLECSCR
301: GELALAHTDC ALKWFGIKGT RTCEVCKEEV QNLPVTLLRV QSTRAGDASR ATGPRYVRYR LWHGTPILVV ISILAYFCFL EQLLVAHNGF AALAISLPFS
401: CILGLFSSLT TTSMVARRYV WIYAAIQFLF VVFFTHLFYR YLHLQAVISI ILATFAGFGV GMIGNSIIIE VLRWRTMAPA QPRRAHRPRV AQQQAPTSGQ
501: PSGEPSATGE GQRSATVDIE NPAAPQA
101: AVAATPGSNA SRTPGSGSGP GKPPAPQRTP SFMLRQTVRS LLPGGGSFKS SVRDYEASLS RLFSGRIART SSLPAVDHAL AASVHAADKT PPSAPAAAAD
201: NKTGMHRSQS LPMNMKKFSS AKSIKRMNSL GGVYRVVPST PRAPAATSNA VPDIVPTEPG AGEGEDDHGE DIAEEEAVCR ICMVELSEGG GAMKLECSCR
301: GELALAHTDC ALKWFGIKGT RTCEVCKEEV QNLPVTLLRV QSTRAGDASR ATGPRYVRYR LWHGTPILVV ISILAYFCFL EQLLVAHNGF AALAISLPFS
401: CILGLFSSLT TTSMVARRYV WIYAAIQFLF VVFFTHLFYR YLHLQAVISI ILATFAGFGV GMIGNSIIIE VLRWRTMAPA QPRRAHRPRV AQQQAPTSGQ
501: PSGEPSATGE GQRSATVDIE NPAAPQA
001: MMDDKARKEE EHHVSHQHNH SPLQRDGNSA EIAQGQELSS PGRDLWRRGL VLDLPSTTPE DTTRDDLFRR NASLTSSPVA KRVNFSPMSS PRVGQRGASL
101: SPSSSTSSSS RNKPNSLKNL IPKLSFKNRN SNNDNVDIEK AADLGFVSSP SSGNGRDRST WTLTNILTPR LKKTESLPVT PIAHSNPEST HGRFAVDLVT
201: STKKGPPLPI HRSRSVPAFN KDGSQRQLGV FRVIPTPNMS PTRNTIKLND ANVDGAEDVP EEEAVCRICL VELGEDSEAF KMECLCRGEL ALAHKECTIK
301: WFTIKGNRTC DVCKQEVQNL PVTLLRMQNS RGSIGAPDAE AAHYSLWQDV PILVIVSMLA YFCFLEQLLL TKMQSGAIAV SLPFSCVLGL FASMTATTMV
401: PKRYVWIYAT TQFGLVVFFS HIFFTLVRMQ PVVAILLATI VGFGLTMSGT TGIVEFSKWR RSNRTAELPS SSQVDQPLVE TTDQNISGSR N
101: SPSSSTSSSS RNKPNSLKNL IPKLSFKNRN SNNDNVDIEK AADLGFVSSP SSGNGRDRST WTLTNILTPR LKKTESLPVT PIAHSNPEST HGRFAVDLVT
201: STKKGPPLPI HRSRSVPAFN KDGSQRQLGV FRVIPTPNMS PTRNTIKLND ANVDGAEDVP EEEAVCRICL VELGEDSEAF KMECLCRGEL ALAHKECTIK
301: WFTIKGNRTC DVCKQEVQNL PVTLLRMQNS RGSIGAPDAE AAHYSLWQDV PILVIVSMLA YFCFLEQLLL TKMQSGAIAV SLPFSCVLGL FASMTATTMV
401: PKRYVWIYAT TQFGLVVFFS HIFFTLVRMQ PVVAILLATI VGFGLTMSGT TGIVEFSKWR RSNRTAELPS SSQVDQPLVE TTDQNISGSR N
Arabidopsis Description
At3g09760/F8A24.19 [Source:UniProtKB/TrEMBL;Acc:Q940P1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.