CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus, plasma membrane

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plasma membrane
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY41589	Canola	nucleus	59.33	58.68
CDY44728	Canola	cytosol, nucleus, plasma membrane	44.22	42.43
CDX73994	Canola	cytosol	37.11	35.01
CDY41588	Canola	nucleus	36.0	33.54
CDY44727	Canola	cytosol	24.0	29.67
KRH67679	Soybean	cytosol	18.67	19.18
KRG95972	Soybean	cytosol, nucleus, plasma membrane	18.0	18.0
VIT_08s0040g01950.t01	Wine grape	cytosol, nucleus, plasma membrane	18.44	16.09
CDY69891	Canola	plasma membrane	6.44	15.59
KRH19853	Soybean	cytosol, peroxisome, plasma membrane	17.33	15.51
CDY10383	Canola	cytosol, mitochondrion, peroxisome, plasma membrane	9.11	14.14
CDX70311	Canola	cytosol	9.56	14.01
CDY44346	Canola	cytosol	12.89	13.91
CDY62901	Canola	cytosol	12.89	13.84
CDY10402	Canola	mitochondrion	10.89	13.24
TraesCS2D01G037600.3	Wheat	plasma membrane	10.89	9.3
Os04t0105100-01	Rice	plasma membrane	9.33	9.15
EES10335	Sorghum	nucleus	10.44	9.07
Zm00001d024927_P002	Maize	cytosol	9.78	8.51
TraesCS6B01G005200.1	Wheat	cytosol, nucleus, plasma membrane	7.56	7.46
Os06t0340200-02	Rice	cytosol, endoplasmic reticulum, peroxisome, plastid	7.78	7.04
EES04310	Sorghum	plasma membrane	8.0	6.43
Zm00001d016874_P001	Maize	cytosol, endoplasmic reticulum, nucleus	7.11	6.3
CDY31533	Canola	cytosol, nucleus, plasma membrane	6.0	5.42
CDY08057	Canola	cytosol, peroxisome, plasma membrane	4.67	4.81
CDX74109	Canola	cytosol, peroxisome, plasma membrane	4.44	4.58
CDY24702	Canola	cytosol	4.0	4.07
CDY05254	Canola	cytosol	3.78	3.82
CDY09194	Canola	cytosol, peroxisome, plasma membrane	4.0	3.76
CDY67417	Canola	endoplasmic reticulum, plasma membrane	4.0	3.52
CDY18852	Canola	cytosol	2.44	2.54
CDY02603	Canola	cytosol, peroxisome, plasma membrane	2.0	2.33
CDY47182	Canola	cytosol	1.78	2.05

Protein Annotations

KEGG:00220+6.3.2.-	KEGG:00261+6.3.2.-	KEGG:00380+6.3.2.-	MapMan:19.2.2.1.5.3.4	Gene3D:3.30.40.10	GO:A0A078F4H4
UniProt:A0A078F4H4	EnsemblPlants:CDY07939	ProteinID:CDY07939	ProteinID:CDY07939.1	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0008270	GO:GO:0016020	GO:GO:0016021	GO:GO:0046872	EnsemblPlantsGene:GSBRNA2T00125143001
InterPro:IPR011016	InterPro:IPR013083	InterPro:MARCH-like	PFAM:PF12906	PFscan:PS51292	PANTHER:PTHR23012
PANTHER:PTHR23012:SF92	SMART:SM00744	SUPFAM:SSF57850	TMHMM:TMhelix	UniPathway:UPA00143	UniParc:UPI0004EDDF36
InterPro:Znf_RING-CH	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

BnaC03g35840DBnaC03g35840D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F4H4]

Coordinates

chrLK031982:-:205607..208707

Molecular Weight (calculated)

49765.7 Da

IEP (calculated)

8.484

GRAVY (calculated)

-0.332

Length

450 amino acids

Sequence
(BLAST)

001: MDGRDQPRVE EHSSLPPPPQ REEDSPEIAQ EEDPWRRGIV SGTTPEDTGE DLSRRNASLT SSPVAKRVNF SPMSSPRIGQ RGASLSPSSS RNRPNSLKNL
101: VPKLSFKNRN SDVEKADDLA FEGNVRDRST WTLSNILTPR LKKTESLPVT PLAHSNPGST HGRYVADPVT TMKKGPPLPI HRSRSVPAFN KDGSLRQAGV
201: FRVIPTPNMT PARNNIKLND TDVDGGEDVP EEEAVCRICM VELGEDSDAF KMECMCRGEL ALAHKECTIK WFTIKGNRTC DVCKQEVQNL PVTLLRMQNS
301: QGNFGDADTE ASHYRQVVWK DVPVLVIVSM LAYFCFLEQL LLTKMKSGAI AISLPFSCVL GLLASMTTTT MVKKQYIWIY ATVQFGLVVF FSHIFFSLVH
401: MKPVVSILLA TLVGFGLTMS GQTGIAEFAK WRRVQRTTEP PSSSPAQTAG

Best Arabidopsis Sequence Match ( AT3G09760.1 )
(BLAST)

001: MMDDKARKEE EHHVSHQHNH SPLQRDGNSA EIAQGQELSS PGRDLWRRGL VLDLPSTTPE DTTRDDLFRR NASLTSSPVA KRVNFSPMSS PRVGQRGASL
101: SPSSSTSSSS RNKPNSLKNL IPKLSFKNRN SNNDNVDIEK AADLGFVSSP SSGNGRDRST WTLTNILTPR LKKTESLPVT PIAHSNPEST HGRFAVDLVT
201: STKKGPPLPI HRSRSVPAFN KDGSQRQLGV FRVIPTPNMS PTRNTIKLND ANVDGAEDVP EEEAVCRICL VELGEDSEAF KMECLCRGEL ALAHKECTIK
301: WFTIKGNRTC DVCKQEVQNL PVTLLRMQNS RGSIGAPDAE AAHYSLWQDV PILVIVSMLA YFCFLEQLLL TKMQSGAIAV SLPFSCVLGL FASMTATTMV
401: PKRYVWIYAT TQFGLVVFFS HIFFTLVRMQ PVVAILLATI VGFGLTMSGT TGIVEFSKWR RSNRTAELPS SSQVDQPLVE TTDQNISGSR N

Arabidopsis Description

At3g09760/F8A24.19 [Source:UniProtKB/TrEMBL;Acc:Q940P1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.