CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 2
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plasma membrane, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY10383	Canola	cytosol, mitochondrion, peroxisome, plasma membrane	70.36	74.48
CDY69891	Canola	plasma membrane	17.59	29.03
CDY62901	Canola	cytosol	35.18	25.78
CDY44346	Canola	cytosol	34.85	25.66
CDY10402	Canola	mitochondrion	23.45	19.46
Bra028847.1-P	Field mustard	cytosol	13.68	12.1
CDY41589	Canola	nucleus	14.66	9.89
CDY44728	Canola	cytosol, nucleus, plasma membrane	14.98	9.81
CDY07939	Canola	cytosol, nucleus, plasma membrane	14.01	9.56
CDX73994	Canola	cytosol	14.01	9.01
CDY41588	Canola	nucleus	13.03	8.28
KRH32447	Soybean	plasma membrane	8.47	5.35
AT5G03180.2	Thale cress	nucleus	7.49	4.94
CDY44727	Canola	cytosol	4.56	3.85
CDY18852	Canola	cytosol	3.91	2.77
CDY24702	Canola	cytosol	3.91	2.71
CDY05254	Canola	cytosol	3.91	2.7
CDY31533	Canola	cytosol, nucleus, plasma membrane	4.23	2.61
CDY67417	Canola	endoplasmic reticulum, plasma membrane	3.91	2.35
CDY09194	Canola	cytosol, peroxisome, plasma membrane	3.26	2.09
CDY02603	Canola	cytosol, peroxisome, plasma membrane	2.61	2.07
CDY08057	Canola	cytosol, peroxisome, plasma membrane	2.93	2.06
CDX74109	Canola	cytosol, peroxisome, plasma membrane	2.93	2.06
CDY47182	Canola	cytosol	2.61	2.05

Protein Annotations

KEGG:00220+6.3.2.-	KEGG:00261+6.3.2.-	KEGG:00380+6.3.2.-	MapMan:19.2.2.1.5.3.4	Gene3D:3.30.40.10	GO:A0A078C021
EnsemblPlants:CDX70311	ProteinID:CDX70311	ProteinID:CDX70311.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0008270
EnsemblPlantsGene:GSBRNA2T00136464001	InterPro:IPR011016	InterPro:IPR013083	InterPro:MARCH-like	PFAM:PF12906	PFscan:PS51292
PANTHER:PTHR23012	PANTHER:PTHR23012:SF92	SMART:SM00744	SUPFAM:SSF57850	TMHMM:TMhelix	UniPathway:UPA00143
UniParc:UPI0004EF1D82	InterPro:Znf_RING-CH	InterPro:Znf_RING/FYVE/PHD	:	:	:

Description

BnaA10g26600D

Coordinates

chrLK031790:-:4063973..4065556

Molecular Weight (calculated)

34430.1 Da

IEP (calculated)

6.590

GRAVY (calculated)

0.083

Length

307 amino acids

Sequence
(BLAST)

001: MEFLLRLLKR YHQANMKDGE TLFDRVTSMK RERTLPIRRT RSVPTLIDKY GNVKPVGVFR VIPTPSRVDT ESLELMHERH DGGEDVSEEE AVCRICMVEL
101: GQDSEAFKME CMCKGELALA HKDCTIKWFT IKGNITCDVC KQEVKNLPVT LLRVEDDSQD LSSGAEHTES NQGKDVPILV TVSMLAYFCF LEQLLVMDMK
201: SSAVAVALTF ACIIGLLGSA TSTTMVKGKY VWIFATIQYS IVVLFGHVFY SKFDQPVTCI VIATVVGFGL TMSGAAVITM FMEWRRSHAH HQPAITQVAT
301: PPFQTIE

Best Arabidopsis Sequence Match ( AT3G09760.1 )
(BLAST)

001: MMDDKARKEE EHHVSHQHNH SPLQRDGNSA EIAQGQELSS PGRDLWRRGL VLDLPSTTPE DTTRDDLFRR NASLTSSPVA KRVNFSPMSS PRVGQRGASL
101: SPSSSTSSSS RNKPNSLKNL IPKLSFKNRN SNNDNVDIEK AADLGFVSSP SSGNGRDRST WTLTNILTPR LKKTESLPVT PIAHSNPEST HGRFAVDLVT
201: STKKGPPLPI HRSRSVPAFN KDGSQRQLGV FRVIPTPNMS PTRNTIKLND ANVDGAEDVP EEEAVCRICL VELGEDSEAF KMECLCRGEL ALAHKECTIK
301: WFTIKGNRTC DVCKQEVQNL PVTLLRMQNS RGSIGAPDAE AAHYSLWQDV PILVIVSMLA YFCFLEQLLL TKMQSGAIAV SLPFSCVLGL FASMTATTMV
401: PKRYVWIYAT TQFGLVVFFS HIFFTLVRMQ PVVAILLATI VGFGLTMSGT TGIVEFSKWR RSNRTAELPS SSQVDQPLVE TTDQNISGSR N

Arabidopsis Description

At3g09760/F8A24.19 [Source:UniProtKB/TrEMBL;Acc:Q940P1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.