CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, plasma membrane, peroxisome

Predictor Summary:

nucleus 1
cytosol 1
mitochondrion 1
plasma membrane 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plasma membrane
Any Predictor:	cytosol, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra001193.1-P	Field mustard	cytosol	92.91	93.12
CDX74109	Canola	cytosol, peroxisome, plasma membrane	87.41	87.41
CDY24702	Canola	cytosol	40.96	40.5
CDY05254	Canola	cytosol	34.32	33.71
CDY18852	Canola	cytosol	32.95	33.26
AT3G06330.1	Thale cress	cytosol	31.12	31.92
CDY02603	Canola	cytosol, peroxisome, plasma membrane	8.01	9.07
CDY47182	Canola	cytosol	7.09	7.93
CDY44727	Canola	cytosol	4.12	4.95
CDY07939	Canola	cytosol, nucleus, plasma membrane	4.81	4.67
PGSC0003DMT400004459	Potato	cytosol, nucleus, plasma membrane	5.49	4.65
CDY62901	Canola	cytosol	4.35	4.53
CDY44346	Canola	cytosol	4.12	4.32
CDY41589	Canola	nucleus	4.35	4.18
Solyc09g007680.2.1	Tomato	cytosol, nucleus, plasma membrane	4.81	4.05
CDY44728	Canola	cytosol, nucleus, plasma membrane	4.35	4.05
CDY10402	Canola	mitochondrion	2.97	3.51
HORVU6Hr1G001690.9	Barley	cytosol, nucleus	3.66	3.48
TraesCS6D01G005100.1	Wheat	plasma membrane	3.66	3.43
TraesCS6A01G001000.1	Wheat	cytosol, nucleus, plasma membrane	3.2	3.18
CDY41588	Canola	nucleus	3.43	3.11
CDX70311	Canola	cytosol	2.06	2.93
CDY69891	Canola	plasma membrane	1.14	2.69
CDY67417	Canola	endoplasmic reticulum, plasma membrane	2.97	2.54
CDX73994	Canola	cytosol	2.75	2.52
CDY09194	Canola	cytosol, peroxisome, plasma membrane	2.29	2.09
CDY31533	Canola	cytosol, nucleus, plasma membrane	2.29	2.01
KRG90054	Soybean	cytosol, peroxisome, vacuole	2.06	1.89
CDY10383	Canola	cytosol, mitochondrion, peroxisome, plasma membrane	0.69	1.03
VIT_12s0034g00630.t01	Wine grape	cytosol, nucleus	0.0	0.0

Protein Annotations

KEGG:00220+6.3.2.-	KEGG:00261+6.3.2.-	KEGG:00380+6.3.2.-	MapMan:19.2.2.1.5.3.4	Gene3D:3.30.40.10	GO:A0A078F4S5
UniProt:A0A078F4S5	EnsemblPlants:CDY08057	ProteinID:CDY08057	ProteinID:CDY08057.1	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0008270	GO:GO:0016020	GO:GO:0016021	GO:GO:0046872	EnsemblPlantsGene:GSBRNA2T00125313001
InterPro:IPR011016	InterPro:IPR013083	InterPro:MARCH-like	PFAM:PF12906	PFscan:PS51292	PANTHER:PTHR23012
PANTHER:PTHR23012:SF84	SMART:SM00744	SUPFAM:SSF57850	TMHMM:TMhelix	UniPathway:UPA00143	UniParc:UPI0004EE2D3B
InterPro:Znf_RING-CH	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

BnaC03g34660DBnaC03g34660D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F4S5]

Coordinates

chrLK031982:-:923501..926200

Molecular Weight (calculated)

48294.1 Da

IEP (calculated)

7.021

GRAVY (calculated)

-0.027

Length

437 amino acids

Sequence
(BLAST)

001: MTMMQQDSAA EQREIAIIVD DSSSPRPPHS QGDHQVEEKS TEDVQSSQTH LDLSIQIPLS SIPFVSGHSS KTSLKSTSSF KSGSTSYSPR GILRNLSLQK
101: KVVAHPESER RSLLSPSPME TAKTPSTAGL TTSPYWKRCL SLPSRYAAKL SPVVPPQVPV GVPGEPPNKD PTYPAVPRSL SMPGGNKVIV RSVSFEHHKA
201: RVSSVTSSDQ TSPVPTEETD EEIPEEEAVC RICLDVFEEG NTLKMECSCK GDLRLVHEAC AIKWFSAKGT RTCDVCRQEV KNLPVILLRV PITNQPNNMR
301: DLNQQIQSQT ASAWQEFVVL VLISAVCYFF FLEQLLIRDL NTQAVYIAAP FSLMLGLLAS LFAIVLAIRE YIWTYAALEF ALVGILVHLL YTAVRLPPIY
401: SILFAGILGF GIAVCLNSLY LHYFAWRLRV AENSTQV

Best Arabidopsis Sequence Match ( AT3G06330.1 )
(BLAST)

001: MKMQDSAAQE PEIAIIVGDS SSSSLHSSSQ VTEKSTEDVP SCSHLDLSIQ IPSRSLPFGN GRNPKGSLKS TPSFKSGTTS SPRGILRNLS LKKKVISQPE
101: SERSSLLSPG LMETAKKPNA TGSTTSPYWK RCLSLPSRQA AKLSPVVSTQ LSAGVPGDPP NKDYSRSLSM PGRNKVIVRS ISFDNHKARV SSETSADQVS
201: SVPPEETDEE IPEEEAVCRI CLDVCEEGNT LKMECSCKGD LRLVHEACAM KWFSTKGTRT CDVCRQVVQN LPVTLVRVPT PNQQNNRRGS SQQNMPSQTV
301: SAWQEFVVLV LISTVCYFFF LEQLLIRDLN KQAIYIAAPF SLTLGLLASI FAIVLAIREY IWTYAALEFA LVGMLVHIFY ATVRLSATYS ILFAGILGFG
401: IAVCLNSLYL HYFAWRVRVA QNSSPV

Arabidopsis Description

AT3g06330/F24P17_21 [Source:UniProtKB/TrEMBL;Acc:Q9SQT6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.