CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

nucleus 1
cytosol 1
plastid 1
plasma membrane 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plasma membrane
Any Predictor:	cytosol, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	plastid
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY47182	Canola	cytosol	83.94	82.86
AT5G18760.1	Thale cress	plastid	64.51	60.58
GSMUA_Achr1P11310_001	Banana	cytosol, nucleus, plasma membrane	17.62	16.19
CDY69891	Canola	plasma membrane	7.25	15.05
CDY24702	Canola	cytosol	12.95	11.31
CDY18852	Canola	cytosol	10.1	9.01
CDY05254	Canola	cytosol	10.36	8.99
CDX74109	Canola	cytosol, peroxisome, plasma membrane	9.07	8.01
CDY08057	Canola	cytosol, peroxisome, plasma membrane	9.07	8.01
KRH20994	Soybean	cytosol	5.7	7.17
PGSC0003DMT400002463	Potato	plasma membrane	1.81	3.87
CDY41589	Canola	nucleus	3.63	3.08
CDX73994	Canola	cytosol	3.63	2.94
CDY41588	Canola	nucleus	3.63	2.9
CDY44728	Canola	cytosol, nucleus, plasma membrane	3.37	2.77
CDX70311	Canola	cytosol	2.07	2.61
CDY09194	Canola	cytosol, peroxisome, plasma membrane	3.11	2.51
CDY44346	Canola	cytosol	2.33	2.16
CDY10383	Canola	cytosol, mitochondrion, peroxisome, plasma membrane	1.55	2.07
CDY07939	Canola	cytosol, nucleus, plasma membrane	2.33	2.0
PGSC0003DMT400002459	Potato	plastid	1.3	1.92
CDY62901	Canola	cytosol	2.07	1.91
CDY31533	Canola	cytosol, nucleus, plasma membrane	2.33	1.81
CDY10402	Canola	mitochondrion	1.55	1.62
Solyc06g016770.2.1	Tomato	cytosol, nucleus, plasma membrane	2.07	1.59
PGSC0003DMT400074985	Potato	cytosol, nucleus, plasma membrane	1.81	1.4
CDY67417	Canola	endoplasmic reticulum, plasma membrane	1.55	1.17
CDY44727	Canola	cytosol	0.52	0.55

Protein Annotations

KEGG:00220+6.3.2.-	KEGG:00261+6.3.2.-	KEGG:00380+6.3.2.-	MapMan:19.2.2.1.5.3.4	Gene3D:3.30.40.10	GO:A0A078ESR3
EnsemblPlants:CDY02603	ProteinID:CDY02603	ProteinID:CDY02603.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0008270
EnsemblPlantsGene:GSBRNA2T00114727001	InterPro:IPR011016	InterPro:IPR013083	InterPro:MARCH-like	PFAM:PF12906	PFscan:PS51292
PANTHER:PTHR23012	PANTHER:PTHR23012:SF84	SMART:SM00744	SUPFAM:SSF57850	TMHMM:TMhelix	UniPathway:UPA00143
UniParc:UPI0004EB07DD	InterPro:Znf_RING-CH	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

BnaC02g08320D

Coordinates

chrLK031936:+:332500..334518

Molecular Weight (calculated)

42829.9 Da

IEP (calculated)

7.969

GRAVY (calculated)

0.015

Length

386 amino acids

Sequence
(BLAST)

001: MQDSSPSSQV KEDVSRSQPN KTQSDASIHK LPNPMPIGIL RNLSLKRKAS LPNYEKRLLL SPTVSETSEK PNSSVASLPY WKRCLSLPSS ANAANKLSLA
101: TSTPPVVHTD QSTSNRDGAS VSRSLSMPGR NKVIVRAVSF DNTNKQHVSN EASGCGDEIT PVTAEETEEE IPEEEAVCRI CLDVCEEGNT LKMECSCKGD
201: LRLVHEHCAI KWFSTKGTRI CDVCRQEVRN LPVILLRVPT INQLTTRREL TQQNPQPQSI SVGQEFVVLV LISTVCYFFF LEHLLIRDLK SQAIFVAAPF
301: SFTLALLAST FAVVLAIREY MWTYAALEFA LVALLVHLLY LTIGMPVVYS MLFAGILGFG MAMCLNQLYV CYASRLVRVP QNRNLV

Best Arabidopsis Sequence Match ( AT5G18760.1 )
(BLAST)

001: MMEGSSIQPP RNFVLAKDSS TGSSSSSSSS QVKEQSVEDV SRSQPSGSQL DVSIQIPPKP TPSLGILRNL SLKRKASLPN YERRLLLSPS VSETSEKPLV
101: ASPITSPYWK RCLSLPSSNS AKLSLVVSTT PVSAVVHSEQ PKSNKDGLHA SVSRSLSMNR VIVRAVSFDD NKNHISNEAN GDQITPVPAE ETEEEIPEEE
201: AVCRICLDVC EEGNTLKMEC SCKGDLRLVH EHCAIKWFST KGTRICDVCR QEVRNLPVIL LRVPTINQLT NRRELTQQSS EPQSISVGQE FVVLVLISTV
301: CYFFFLEHLL IRDLNSQAIF VAAPFSFTLA LLASTFAVIL AIREYIWTYA ALEFALVALL VHLLYATLRV PVIYAMLFAG ILGFGMAMCL NLLCICYSSR
401: PVRFPRNTNL V

Arabidopsis Description

At5g18760 [Source:UniProtKB/TrEMBL;Acc:Q1H5A5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.