Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g016770.2.1 | Tomato | cytosol, nucleus, plasma membrane | 72.95 | 72.22 |
| GSMUA_Achr11P... | Banana | plasma membrane | 8.22 | 35.34 |
| PGSC0003DMT400020932 | Potato | cytosol, peroxisome, plasma membrane | 5.01 | 4.86 |
| PGSC0003DMT400004459 | Potato | cytosol, nucleus, plasma membrane | 5.01 | 4.84 |
| PGSC0003DMT400002463 | Potato | plasma membrane | 1.4 | 3.87 |
| PGSC0003DMT400002459 | Potato | plastid | 1.8 | 3.45 |
| PGSC0003DMT400058815 | Potato | cytosol, peroxisome, plasma membrane | 1.8 | 2.14 |
| AT5G18760.1 | Thale cress | plastid | 1.6 | 1.95 |
| CDY02603 | Canola | cytosol, peroxisome, plasma membrane | 1.4 | 1.81 |
| Bra023691.1-P | Field mustard | cytosol | 1.4 | 1.79 |
| CDY47182 | Canola | cytosol | 1.4 | 1.79 |
Protein Annotations
| MapMan:19.2.2.1.5.3.4 | Gene3D:3.30.40.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0008270 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0046872 | InterPro:IPR011016 | InterPro:IPR013083 | UniProt:M1CUG4 |
| InterPro:MARCH-like | PFAM:PF12906 | EnsemblPlantsGene:PGSC0003DMG400029165 | PGSC:PGSC0003DMG400029165 | EnsemblPlants:PGSC0003DMT400074985 | PFscan:PS51292 |
| PANTHER:PTHR23012 | PANTHER:PTHR23012:SF25 | SMART:SM00744 | SUPFAM:SSF57850 | TMHMM:TMhelix | UniParc:UPI0002961F7D |
| InterPro:Znf_RING-CH | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : | : |
Description
Zinc finger family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400029165]
Coordinates
chr6:+:10229160..10235708
Molecular Weight (calculated)
55294.3 Da
IEP (calculated)
8.535
GRAVY (calculated)
-0.215
Length
499 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEVYDEYVR SNVCERVAIQ IPQGKSSSGI TEESEHAKQW KRPNLFVEIP SKSSDASNQE SVQVKMLSAP TPTPKRVNFL LTPSPSNSRA NAFPSPSSCR
101: GKSSIKSLLP RLSFKLRNMN SDTEKATLPD SDTSAMVPQE KVSIPRSWSF TKLFTPRVKR TSSLPVTPID HSNPESASGS ISRAMTFGPK ETQLRISRSL
201: SLPVINKDRR TRRVESFFRV IPSTPQGKDG DSTVPATPPA KVSEDEEPNG EDIPEEEAVC RICLVELCEG GETLKMECSC KGELALAHQE CAFKWFSVKG
301: NRTCDVCKQE VRNLPVTLRR LQSANVGSNS FQHLEINGYR VSQELPILVI VSMLAYFCFL EQLLVGSMGT GAIAISVPFS CVLGLLSSLA SSTMVKRRFV
401: WVYASIQFIL VVFFAHMFYS LVHVQAVLSI LLSTFAGLGV AMCGCSILIE FFRWKRRRQA VLDQQQQNSQ LNQTEISSHI STRQDYQSDL ENPGTVSGS
101: GKSSIKSLLP RLSFKLRNMN SDTEKATLPD SDTSAMVPQE KVSIPRSWSF TKLFTPRVKR TSSLPVTPID HSNPESASGS ISRAMTFGPK ETQLRISRSL
201: SLPVINKDRR TRRVESFFRV IPSTPQGKDG DSTVPATPPA KVSEDEEPNG EDIPEEEAVC RICLVELCEG GETLKMECSC KGELALAHQE CAFKWFSVKG
301: NRTCDVCKQE VRNLPVTLRR LQSANVGSNS FQHLEINGYR VSQELPILVI VSMLAYFCFL EQLLVGSMGT GAIAISVPFS CVLGLLSSLA SSTMVKRRFV
401: WVYASIQFIL VVFFAHMFYS LVHVQAVLSI LLSTFAGLGV AMCGCSILIE FFRWKRRRQA VLDQQQQNSQ LNQTEISSHI STRQDYQSDL ENPGTVSGS
001: MATEEKPLNS LDLSHDDSSP ASNQAEGSSA ITEDTSANVQ QWRRKNLSLQ IPSRAAGLSP EDSVVIKMPP TPSPTPRRVN FALTSSSPGP TPTSSSVLPR
101: GKSSLKNLLP KAGCKPKTSN TDIEKGQGNA CSPPASQEKA SISRSLSLSK LFTPRIKRTS SLPVTPVILS NSESAHGGTS VAPQTPNRKG SVHIARSRSV
201: PLNDKELSLK GMDSFFRVIP STPRVKEGDV FSNASEAGNT ETGDADGEDI PEDEAVCRIC LVELCEGGET LKMECSCKGE LALAHKDCAL KWFTIKGNKT
301: CEVCKQEVKN LPVTLLRIQS LRNSGVPQLD VSGYRVWQEV PVLVIISMLA YFCFLEQLLV ENMGTGAIAI SLPFSCILGL LASMTASTMV MRRFVWIYAS
401: VQFALVVLFA HIFYSVVKLQ PVLSVLLSTF AGFGVCICGS SVMVEFVRWR RRWRARRLEQ QLNHALTLSQ PPQPLDPTTS LHHSNTS
101: GKSSLKNLLP KAGCKPKTSN TDIEKGQGNA CSPPASQEKA SISRSLSLSK LFTPRIKRTS SLPVTPVILS NSESAHGGTS VAPQTPNRKG SVHIARSRSV
201: PLNDKELSLK GMDSFFRVIP STPRVKEGDV FSNASEAGNT ETGDADGEDI PEDEAVCRIC LVELCEGGET LKMECSCKGE LALAHKDCAL KWFTIKGNKT
301: CEVCKQEVKN LPVTLLRIQS LRNSGVPQLD VSGYRVWQEV PVLVIISMLA YFCFLEQLLV ENMGTGAIAI SLPFSCILGL LASMTASTMV MRRFVWIYAS
401: VQFALVVLFA HIFYSVVKLQ PVLSVLLSTF AGFGVCICGS SVMVEFVRWR RRWRARRLEQ QLNHALTLSQ PPQPLDPTTS LHHSNTS
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4K0E2]
SUBAcon: [peroxisome,nucleus,cytosol]
SUBAcon: [peroxisome,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.