Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, cytosol, plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 1
- plasma membrane 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g067800.2.1 | Tomato | plastid | 84.09 | 92.19 |
| VIT_05s0020g02080.t01 | Wine grape | cytosol | 32.54 | 31.93 |
| PGSC0003DMT400002463 | Potato | plasma membrane | 1.9 | 4.42 |
| TraesCS6A01G001000.1 | Wheat | cytosol, nucleus, plasma membrane | 4.28 | 4.09 |
| TraesCS6D01G005100.1 | Wheat | plasma membrane | 4.51 | 4.07 |
| HORVU6Hr1G001690.9 | Barley | cytosol, nucleus | 4.28 | 3.91 |
| CDY44727 | Canola | cytosol | 3.33 | 3.85 |
| PGSC0003DMT400004459 | Potato | cytosol, nucleus, plasma membrane | 4.51 | 3.68 |
| PGSC0003DMT400020932 | Potato | cytosol, peroxisome, plasma membrane | 3.33 | 2.72 |
| PGSC0003DMT400002459 | Potato | plastid | 1.19 | 1.92 |
| PGSC0003DMT400074985 | Potato | cytosol, nucleus, plasma membrane | 2.14 | 1.8 |
Protein Annotations
| EntrezGene:102592492 | MapMan:19.2.2.1.5.3.4 | Gene3D:3.30.40.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0008270 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0046872 | InterPro:IPR011016 | InterPro:IPR013083 |
| UniProt:M1C3C8 | InterPro:MARCH-like | PFAM:PF12906 | EnsemblPlantsGene:PGSC0003DMG400022853 | PGSC:PGSC0003DMG400022853 | EnsemblPlants:PGSC0003DMT400058815 |
| PFscan:PS51292 | PANTHER:PTHR23012 | PANTHER:PTHR23012:SF84 | SMART:SM00744 | SUPFAM:SSF57850 | TMHMM:TMhelix |
| UniParc:UPI0002962A16 | RefSeq:XP_006357002.1 | InterPro:Znf_RING-CH | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : |
Description
Zinc finger family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400022853]
Coordinates
chr1:-:59849014..59857112
Molecular Weight (calculated)
46054.1 Da
IEP (calculated)
7.414
GRAVY (calculated)
-0.071
Length
421 amino acids
Sequence
(BLAST)
(BLAST)
001: MEAPRATEAA PIPFSDNVPP ASPRISQADF QKREPSNMVA GLGPSMKKAD LSLQIPPRHA GIGTGRKYSP RSPGPTGGFL RALSFKKKVA SSDGERSSLL
101: SSDHKVVPGS PLAANFFSCN WQKCASLPVT PASNSSPSVS TPISARTHGE QQRSNSSRTG ASKACMSRSL SVPGRNFVIV RSMSFATHEE HVPDTGDEIT
201: PAPENEDREI PEEEAVCRIC LEACDEGNTF QMECSCKGDL RLVHEECAIK WFSVKGNKIC DVCRQEVSNL PVTLLRIPST SQQDNRSEHN NSGRISAWQD
301: FVVLVLISTI CYFFFLEQLL VHDMKTQALV IAAPFAFTLG LLASIFAVIL AIKEYIWSYA ALEFALVAVS LHVLYSMLQL QAIYSIMVAS VLGFGATMSI
401: NAMYIRYYSW RFQIAENSSP A
101: SSDHKVVPGS PLAANFFSCN WQKCASLPVT PASNSSPSVS TPISARTHGE QQRSNSSRTG ASKACMSRSL SVPGRNFVIV RSMSFATHEE HVPDTGDEIT
201: PAPENEDREI PEEEAVCRIC LEACDEGNTF QMECSCKGDL RLVHEECAIK WFSVKGNKIC DVCRQEVSNL PVTLLRIPST SQQDNRSEHN NSGRISAWQD
301: FVVLVLISTI CYFFFLEQLL VHDMKTQALV IAAPFAFTLG LLASIFAVIL AIKEYIWSYA ALEFALVAVS LHVLYSMLQL QAIYSIMVAS VLGFGATMSI
401: NAMYIRYYSW RFQIAENSSP A
001: MKMQDSAAQE PEIAIIVGDS SSSSLHSSSQ VTEKSTEDVP SCSHLDLSIQ IPSRSLPFGN GRNPKGSLKS TPSFKSGTTS SPRGILRNLS LKKKVISQPE
101: SERSSLLSPG LMETAKKPNA TGSTTSPYWK RCLSLPSRQA AKLSPVVSTQ LSAGVPGDPP NKDYSRSLSM PGRNKVIVRS ISFDNHKARV SSETSADQVS
201: SVPPEETDEE IPEEEAVCRI CLDVCEEGNT LKMECSCKGD LRLVHEACAM KWFSTKGTRT CDVCRQVVQN LPVTLVRVPT PNQQNNRRGS SQQNMPSQTV
301: SAWQEFVVLV LISTVCYFFF LEQLLIRDLN KQAIYIAAPF SLTLGLLASI FAIVLAIREY IWTYAALEFA LVGMLVHIFY ATVRLSATYS ILFAGILGFG
401: IAVCLNSLYL HYFAWRVRVA QNSSPV
101: SERSSLLSPG LMETAKKPNA TGSTTSPYWK RCLSLPSRQA AKLSPVVSTQ LSAGVPGDPP NKDYSRSLSM PGRNKVIVRS ISFDNHKARV SSETSADQVS
201: SVPPEETDEE IPEEEAVCRI CLDVCEEGNT LKMECSCKGD LRLVHEACAM KWFSTKGTRT CDVCRQVVQN LPVTLVRVPT PNQQNNRRGS SQQNMPSQTV
301: SAWQEFVVLV LISTVCYFFF LEQLLIRDLN KQAIYIAAPF SLTLGLLASI FAIVLAIREY IWTYAALEFA LVGMLVHIFY ATVRLSATYS ILFAGILGFG
401: IAVCLNSLYL HYFAWRVRVA QNSSPV
Arabidopsis Description
AT3g06330/F24P17_21 [Source:UniProtKB/TrEMBL;Acc:Q9SQT6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.