Factsheet for VIT_05s0020g02080.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 3
cytosol 2
nucleus 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g067800.2.1	Tomato	plastid	29.14	32.55
PGSC0003DMT400058815	Potato	cytosol, peroxisome, plasma membrane	31.93	32.54
VIT_06s0004g02930.t01	Wine grape	cytosol, peroxisome, plasma membrane	5.59	4.84
CDY44727	Canola	cytosol	3.5	4.12
VIT_08s0040g01950.t01	Wine grape	cytosol, nucleus, plasma membrane	4.66	3.88
HORVU6Hr1G001690.9	Barley	cytosol, nucleus	3.96	3.7
TraesCS6D01G005100.1	Wheat	plasma membrane	3.26	3.0
TraesCS6A01G001000.1	Wheat	cytosol, nucleus, plasma membrane	3.03	2.95
VIT_12s0028g01200.t01	Wine grape	cytosol, endoplasmic reticulum, peroxisome	2.33	1.92
VIT_12s0034g00630.t01	Wine grape	cytosol, nucleus	0.0	0.0

Protein Annotations

EntrezGene:100259554	wikigene:100259554	MapMan:19.2.2.1.5.3.4	Gene3D:3.30.40.10	ProteinID:CBI26130	ProteinID:CBI26130.3
UniProt:D7T6K9	EMBL:FN595749	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0008270
GO:GO:0016020	GO:GO:0016021	GO:GO:0046872	InterPro:IPR011016	InterPro:IPR013083	EntrezGene:LOC100259554
wikigene:LOC100259554	InterPro:MARCH-like	PFAM:PF12906	PFscan:PS51292	PANTHER:PTHR23012	PANTHER:PTHR23012:SF84
SMART:SM00744	SUPFAM:SSF57850	TIGR:TC63300	TMHMM:TMhelix	UniParc:UPI00019832F0	ArrayExpress:VIT_05s0020g02080
EnsemblPlantsGene:VIT_05s0020g02080	EnsemblPlants:VIT_05s0020g02080.t01	unigene:Vvi.12432	RefSeq:XP_002277762	RefSeq:XP_002277762.1	InterPro:Znf_RING-CH
InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr5:-:3820377..3827305

Molecular Weight (calculated)

47613.3 Da

IEP (calculated)

8.328

GRAVY (calculated)

-0.078

Length

429 amino acids

Sequence
(BLAST)

001: MHTAQTVTAG ASEASSPQAN LQILERTNEV VIDSGPREKR PDLSLQIPPR SVNFGNSRSG KGLLQSQGSV KGISPSKGLL RGLSFKKKTA LPDGERSSLL
101: NSDSKPTAES PRLSNFMDVF NWKRSTSLPV SHASNLSPSV STPTSARPYN ERPRSHKGPV HMVDPVVSRS LSIPGRNVVI VRSVSFATRH EQVQTESSDD
201: QITPVPMQNE DEEIPEEEAV CRICLEVCEE GNTLKMECSC KGALRLLHED CAIKWFTTKG NKTCDVCRQE VQNLPVTLLR VPTSAQRDNR QAHNQQSLNS
301: RSVSVWQDFV VLVLISTICY FFFLEQLLIH DMKTQAIVVA APFSFTLGLL ASIFAIILAI KEYIWTYAAL EFALVAIIVH LFYSLLHLKA VYAIMLSAVM
401: GFGIAMSLNS LYIQFFTWRF QITQNSNPV

Best Arabidopsis Sequence Match ( AT3G06330.1 )
(BLAST)

001: MKMQDSAAQE PEIAIIVGDS SSSSLHSSSQ VTEKSTEDVP SCSHLDLSIQ IPSRSLPFGN GRNPKGSLKS TPSFKSGTTS SPRGILRNLS LKKKVISQPE
101: SERSSLLSPG LMETAKKPNA TGSTTSPYWK RCLSLPSRQA AKLSPVVSTQ LSAGVPGDPP NKDYSRSLSM PGRNKVIVRS ISFDNHKARV SSETSADQVS
201: SVPPEETDEE IPEEEAVCRI CLDVCEEGNT LKMECSCKGD LRLVHEACAM KWFSTKGTRT CDVCRQVVQN LPVTLVRVPT PNQQNNRRGS SQQNMPSQTV
301: SAWQEFVVLV LISTVCYFFF LEQLLIRDLN KQAIYIAAPF SLTLGLLASI FAIVLAIREY IWTYAALEFA LVGMLVHIFY ATVRLSATYS ILFAGILGFG
401: IAVCLNSLYL HYFAWRVRVA QNSSPV

Arabidopsis Description

AT3g06330/F24P17_21 [Source:UniProtKB/TrEMBL;Acc:Q9SQT6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.