Factsheet for VIT_06s0004g02930.t01

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
plasma membrane 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY09194	Canola	cytosol, peroxisome, plasma membrane	27.62	28.6
Bra002470.1-P	Field mustard	cytosol, nucleus, plasma membrane	26.41	27.29
Bra020240.1-P	Field mustard	cytosol, peroxisome, plasma membrane	27.02	27.24
CDY67417	Canola	endoplasmic reticulum, plasma membrane	24.8	24.07
AT5G60580.4	Thale cress	cytosol, nucleus, peroxisome	23.79	23.89
KRH22901	Soybean	cytosol	20.36	21.35
CDY31533	Canola	cytosol, nucleus, plasma membrane	21.17	21.08
TraesCS2B01G051700.1	Wheat	cytosol, peroxisome, plasma membrane	10.28	10.32
TraesCS2A01G039300.2	Wheat	cytosol, peroxisome, plasma membrane	9.88	9.68
HORVU2Hr1G005630.19	Barley	mitochondrion	10.48	9.2
VIT_08s0040g01950.t01	Wine grape	cytosol, nucleus, plasma membrane	9.48	9.11
VIT_05s0020g02080.t01	Wine grape	cytosol	4.84	5.59
VIT_12s0028g01200.t01	Wine grape	cytosol, endoplasmic reticulum, peroxisome	3.23	3.07
VIT_12s0034g00630.t01	Wine grape	cytosol, nucleus	0.0	0.0

Protein Annotations

EntrezGene:100257089	wikigene:100257089	MapMan:19.2.2.1.5.3.4	Gene3D:3.30.40.10	ProteinID:CCB43667	ProteinID:CCB43667.1
UniProt:F6GU03	EMBL:FN594951	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003725
GO:GO:0005488	GO:GO:0005575	GO:GO:0008270	GO:GO:0016020	GO:GO:0016021	GO:GO:0046872
InterPro:IPR011016	InterPro:IPR013083	EntrezGene:LOC100257089	wikigene:LOC100257089	InterPro:MARCH-like	PFAM:PF12906
PFscan:PS51292	PANTHER:PTHR23012	PANTHER:PTHR23012:SF25	SMART:SM00744	SUPFAM:SSF57850	TIGR:TC66655
TMHMM:TMhelix	UniParc:UPI000210A8E2	ArrayExpress:VIT_06s0004g02930	EnsemblPlantsGene:VIT_06s0004g02930	EnsemblPlants:VIT_06s0004g02930.t01	RefSeq:XP_002282323
RefSeq:XP_002282323.1	InterPro:Znf_RING-CH	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

No Description!

Coordinates

chr6:-:3652219..3658239

Molecular Weight (calculated)

54630.8 Da

IEP (calculated)

8.753

GRAVY (calculated)

-0.206

Length

496 amino acids

Sequence
(BLAST)

001: MRGEEKPVAE GHDVDEGERA VAIPIQEVED STGITEETPH FQQWRRQNLF LEIPSREMEA SSQDSVRIKM PPTPSPTPKK VNFFLTPSPS DTRVTGSPGP
101: SATKGKSSKK SLLPKLSFKN RSATSDSDKA ANLALGGSST TSREKPSISR SLSLSKIFTP KMNRTSSLPG TPLEHSNPES VSGGSIGSAL KSDTRGVHRR
201: ISRSLSVPVN NKDRSIKRMD SFFRVIPSTP RVKELDAMTM NSSPAVEAEN NEADGEDIPE EEAVCRICLV ELCEGGETLK MECSCKGELA LAHQECAVKW
301: FRIKGNKNCD VCKQEVQNLP VTLLRIQSIQ TRNSGSNRAH QTEVNGYRVW HELPVLVIVS MLAYFCFLEQ LLVGNMGTSA IAISLPFSCV LGLLASMTAS
401: TMVKRRFIWV YASIQFALVV LFAHIFYSLV RVQAVLSILL STFAGLGIAM SGSSIIVELL RWRLRWHAWS EQQQQHATIL NLKTQRLLVG AESIAC

Best Arabidopsis Sequence Match ( AT5G60580.3 )
(BLAST)

001: MATEEKPLNS LDLSHDDSSP ASNQAEGSSA ITEDTSANVQ QWRRKNLSLQ IPSRAAGLSP EDSVVIKMPP TPSPTPRRVN FALTSSSPGP TPTSSSVLPR
101: GKSSLKNLLP KAGCKPKTSN TDIEKGQGNA CSPPASQEKA SISRSLSLSK LFTPRIKRTS SLPVTPVILS NSESAHGGTS VAPQTPNRKG SVHIARSRSV
201: PLNDKELSLK GMDSFFRVIP STPRVKEGDV FSNASEAGNT ETGDADGEDI PEDEAVCRIC LVELCEGGET LKMECSCKGE LALAHKDCAL KWFTIKGNKT
301: CEVCKQEVKN LPVTLLRIQS LRNSGVPQLD VSGYRVWQEV PVLVIISMLA YFCFLEQLLV ENMGTGAIAI SLPFSCILGL LASMTASTMV MRRFVWIYAS
401: VQFALVVLFA HIFYSVVKLQ PVLSVLLSTF AGFGVCICGS SVMVEFVRWR RRWRARRLEQ QLNHALTLSQ PPQPLDPTTS LHHSNTS

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4K0E2]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.