Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, cytosol, plasma membrane
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- cytosol 1
- plasma membrane 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G051700.1 | Wheat | cytosol, peroxisome, plasma membrane | 44.07 | 45.14 |
| HORVU2Hr1G005630.19 | Barley | mitochondrion | 49.21 | 44.07 |
| VIT_06s0004g02930.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 9.68 | 9.88 |
| Bra020240.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 9.09 | 9.35 |
| AT5G60580.4 | Thale cress | cytosol, nucleus, peroxisome | 9.09 | 9.31 |
| CDY09194 | Canola | cytosol, peroxisome, plasma membrane | 8.7 | 9.19 |
| CDY31533 | Canola | cytosol, nucleus, plasma membrane | 8.89 | 9.04 |
| CDY67417 | Canola | endoplasmic reticulum, plasma membrane | 9.09 | 9.0 |
| Bra002470.1-P | Field mustard | cytosol, nucleus, plasma membrane | 8.5 | 8.96 |
| KRH22901 | Soybean | cytosol | 7.91 | 8.46 |
| TraesCS6A01G001000.1 | Wheat | cytosol, nucleus, plasma membrane | 4.35 | 5.0 |
| TraesCS7A01G463200.1 | Wheat | cytosol, nucleus, plasma membrane | 4.15 | 4.33 |
Protein Annotations
| EnsemblPlants:TraesCS2A01G039300.2 | EnsemblPlantsGene:TraesCS2A01G039300 | Gene3D:3.30.40.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0008270 |
| InterPro:IPR011016 | InterPro:IPR013083 | InterPro:MARCH-like | InterPro:Znf_RING-CH | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR23012 |
| PANTHER:PTHR23012:SF25 | PFAM:PF12906 | PFscan:PS51292 | SEG:seg | SMART:SM00744 | SUPFAM:SSF57850 |
| TIGR:cd16495 | TMHMM:TMhelix | MapMan:19.2.2.1.5.3.4 | : | : | : |
Description
No Description!
Coordinates
chr2A:+:16418431..16421303
Molecular Weight (calculated)
53340.9 Da
IEP (calculated)
9.257
GRAVY (calculated)
-0.105
Length
506 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSPRMEQQS SSSGSSATIT NPMHGVGGGG GPAPAPDDQQ PKRPPHLSID IPATTSAPLT PTAAAEAEAV AATTPGSTAS RTPGSGSGSG KNGAPAKAPA
101: PQRTPSFMLR QTVRSLLPGG GSFKSSVRGY EASLSRLFSG RIARTASLPA VDHALAASVH AADKTPPTAP AVAADNKTGM HRSQSLPMNM KKLSSAKSMK
201: RMNSLGGVYR VVPSTPRAPA ATSNAVPDIV PTDPGAGEAE DDRGEDIAEE EAVCRICMVE LSEGGGAMKL ECSCRGELAL AHTDCALKWF GIKGTRTCEV
301: CKEEVQNLPV TLLRVQSTRG AGDASRATGP RYVRYRLWHG TPILVVISIL AYFCFLEQLL VAHNGFAALA ISLPFSCILG LFSSLTTTSM VARRYVWIYA
401: AIQFLFVVFF THLFYRYLHL QAVISIILAT FAGFGVGMIG NSIIIEVLRW RTMAPAQPRH ARRPPRVAQQ QQTAPASGEP SGQPSAADEI QRNASGDVEN
501: PTVPQA
101: PQRTPSFMLR QTVRSLLPGG GSFKSSVRGY EASLSRLFSG RIARTASLPA VDHALAASVH AADKTPPTAP AVAADNKTGM HRSQSLPMNM KKLSSAKSMK
201: RMNSLGGVYR VVPSTPRAPA ATSNAVPDIV PTDPGAGEAE DDRGEDIAEE EAVCRICMVE LSEGGGAMKL ECSCRGELAL AHTDCALKWF GIKGTRTCEV
301: CKEEVQNLPV TLLRVQSTRG AGDASRATGP RYVRYRLWHG TPILVVISIL AYFCFLEQLL VAHNGFAALA ISLPFSCILG LFSSLTTTSM VARRYVWIYA
401: AIQFLFVVFF THLFYRYLHL QAVISIILAT FAGFGVGMIG NSIIIEVLRW RTMAPAQPRH ARRPPRVAQQ QQTAPASGEP SGQPSAADEI QRNASGDVEN
501: PTVPQA
001: MATEEKPLNS LDLSHDDSSP ASNQAEGSSA ITEDTSANVQ QWRRKNLSLQ IPSRAAGLSP EDSVVIKMPP TPSPTPRRVN FALTSSSPGP TPTSSSVLPR
101: GKSSLKNLLP KAGCKPKTSN TDIEKGQGNA CSPPASQEKA SISRSLSLSK LFTPRIKRTS SLPVTPVILS NSESAHGGTS VAPQTPNRKG SVHIARSRSV
201: PLNDKELSLK GMDSFFRVIP STPRVKEGDV FSNASEAGNT ETGDADGEDI PEDEAVCRIC LVELCEGGET LKMECSCKGE LALAHKDCAL KWFTIKGNKT
301: CEVCKQEVKN LPVTLLRIQS LRNSGVPQLD VSGYRVWQEV PVLVIISMLA YFCFLEQLLV ENMGTGAIAI SLPFSCILGL LASMTASTMV MRRFVWIYAS
401: VQFALVVLFA HIFYSVVKLQ PVLSVLLSTF AGFGVCICGS SVMVEFVRWR RRWRARRLEQ QLNHALTLSQ PPQPLDPTTS LHHSNTS
101: GKSSLKNLLP KAGCKPKTSN TDIEKGQGNA CSPPASQEKA SISRSLSLSK LFTPRIKRTS SLPVTPVILS NSESAHGGTS VAPQTPNRKG SVHIARSRSV
201: PLNDKELSLK GMDSFFRVIP STPRVKEGDV FSNASEAGNT ETGDADGEDI PEDEAVCRIC LVELCEGGET LKMECSCKGE LALAHKDCAL KWFTIKGNKT
301: CEVCKQEVKN LPVTLLRIQS LRNSGVPQLD VSGYRVWQEV PVLVIISMLA YFCFLEQLLV ENMGTGAIAI SLPFSCILGL LASMTASTMV MRRFVWIYAS
401: VQFALVVLFA HIFYSVVKLQ PVLSVLLSTF AGFGVCICGS SVMVEFVRWR RRWRARRLEQ QLNHALTLSQ PPQPLDPTTS LHHSNTS
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4K0E2]
SUBAcon: [peroxisome,nucleus,cytosol]
SUBAcon: [peroxisome,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.