Factsheet for Bra020240.1-P

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
plasma membrane 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY09194	Canola	cytosol, peroxisome, plasma membrane	92.28	94.78
Bra002470.1-P	Field mustard	cytosol, nucleus, plasma membrane	75.0	76.88
AT5G60580.4	Thale cress	cytosol, nucleus, peroxisome	68.9	68.62
VIT_06s0004g02930.t01	Wine grape	cytosol, peroxisome, plasma membrane	27.24	27.02
KRH22901	Soybean	cytosol	21.34	22.2
Bra009532.1-P	Field mustard	endoplasmic reticulum, extracellular	2.64	10.57
TraesCS2B01G051700.1	Wheat	cytosol, peroxisome, plasma membrane	9.55	9.51
TraesCS2A01G039300.2	Wheat	cytosol, peroxisome, plasma membrane	9.35	9.09
Bra029786.1-P	Field mustard	nucleus	8.33	9.01
HORVU2Hr1G005630.19	Barley	mitochondrion	9.35	8.14
Bra040226.1-P	Field mustard	cytosol	3.86	4.51
Bra029787.1-P	Field mustard	nucleus	3.86	4.16
Bra020758.1-P	Field mustard	cytosol	3.46	3.84
Bra028847.1-P	Field mustard	cytosol	2.24	3.17
Bra001193.1-P	Field mustard	cytosol	2.44	2.75
Bra023691.1-P	Field mustard	cytosol	1.83	2.3

Protein Annotations

MapMan:19.2.2.1.5.3.4	Gene3D:3.30.40.10	EnsemblPlantsGene:Bra020240	EnsemblPlants:Bra020240.1	EnsemblPlants:Bra020240.1-P	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0008270	GO:GO:0016020	GO:GO:0016021	GO:GO:0046872
InterPro:IPR011016	InterPro:IPR013083	UniProt:M4DUP7	InterPro:MARCH-like	PFAM:PF12906	PFscan:PS51292
PANTHER:PTHR23012	PANTHER:PTHR23012:SF25	SMART:SM00744	SUPFAM:SSF57850	TMHMM:TMhelix	UniParc:UPI000254357B
InterPro:Znf_RING-CH	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

AT5G60580 (E=4e-219) | zinc finger (C3HC4-type RING finger) family protein

Coordinates

chrA02:-:5799047..5801223

Molecular Weight (calculated)

53822.9 Da

IEP (calculated)

8.943

GRAVY (calculated)

-0.102

Length

492 amino acids

Sequence
(BLAST)

001: MATEEKPLDS THGDFATSSN QNSFVTFIFV LNKKAEGSYA ITEGTSTNVQ QWRRKNLSLQ IPSRTTGLSP EDSVVIKMPP TPSPTPRRVN FSLTSTSPGP
101: GPTSSNVPPR GKSSLKNLIP KAGFKPKTSH TDIEKGQGDV VYSPSALQEK ASISRSLSLS KLFTPRIKRT SSLPVTPIVL SKSESAHGGS SAAPHTPSSK
201: GRVQIARSLS VPVNDKEASL KRMDSFFRVI PSTPRVKEGD VFSNASEAGN TETCEADGED IPEEEAVCRI CLVDLCEGGE TLKMECSCKG ELALAHKDCA
301: LKWFTIKGNK TCEVCKQEVK NLPVTLLRIQ SMRLSGVHQI DVTGYRVWQE IPVLVIISML AYFCFLEQLL VEKMGTSAIA ISLPFSCILG LLASMTASTM
401: VMRRFVWIYA SVQFALVVLF AHVFYSVVEL QPVLSVLLST FAGFGVCICG SSVMVEFVRW KRRWRARSLD QQQLNHAQTL DATTSQHHPN AS

Best Arabidopsis Sequence Match ( AT5G60580.3 )
(BLAST)

001: MATEEKPLNS LDLSHDDSSP ASNQAEGSSA ITEDTSANVQ QWRRKNLSLQ IPSRAAGLSP EDSVVIKMPP TPSPTPRRVN FALTSSSPGP TPTSSSVLPR
101: GKSSLKNLLP KAGCKPKTSN TDIEKGQGNA CSPPASQEKA SISRSLSLSK LFTPRIKRTS SLPVTPVILS NSESAHGGTS VAPQTPNRKG SVHIARSRSV
201: PLNDKELSLK GMDSFFRVIP STPRVKEGDV FSNASEAGNT ETGDADGEDI PEDEAVCRIC LVELCEGGET LKMECSCKGE LALAHKDCAL KWFTIKGNKT
301: CEVCKQEVKN LPVTLLRIQS LRNSGVPQLD VSGYRVWQEV PVLVIISMLA YFCFLEQLLV ENMGTGAIAI SLPFSCILGL LASMTASTMV MRRFVWIYAS
401: VQFALVVLFA HIFYSVVKLQ PVLSVLLSTF AGFGVCICGS SVMVEFVRWR RRWRARRLEQ QLNHALTLSQ PPQPLDPTTS LHHSNTS

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4K0E2]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.