Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 6
- vacuole 5
- plasma membrane 6
- golgi 5
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY10383 | Canola | cytosol, mitochondrion, peroxisome, plasma membrane | 92.68 | 39.31 |
| Bra028847.1-P | Field mustard | cytosol | 27.64 | 9.8 |
| Bra029786.1-P | Field mustard | nucleus | 22.76 | 6.15 |
| Bra029787.1-P | Field mustard | nucleus | 19.51 | 5.25 |
| Bra002470.1-P | Field mustard | cytosol, nucleus, plasma membrane | 11.38 | 2.92 |
| KRH32447 | Soybean | plasma membrane | 11.38 | 2.88 |
| Bra020240.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 10.57 | 2.64 |
| AT5G03180.2 | Thale cress | nucleus | 4.07 | 1.07 |
| Bra040226.1-P | Field mustard | cytosol | 2.44 | 0.71 |
| Bra001193.1-P | Field mustard | cytosol | 2.44 | 0.69 |
| Bra020758.1-P | Field mustard | cytosol | 2.44 | 0.68 |
| Bra023691.1-P | Field mustard | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:Bra009532.1 | EnsemblPlants:Bra009532.1-P | EnsemblPlantsGene:Bra009532 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:MARCH-like | PANTHER:PTHR23012 | PANTHER:PTHR23012:SF92 | TMHMM:TMhelix | UniParc:UPI0002547B5B | UniProt:M4CZ85 |
| MapMan:19.2.2.1.5.3.4 | : | : | : | : | : |
Description
AT5G03180 (E=8e-038) | zinc finger (C3HC4-type RING finger) family protein
Coordinates
chrA10:-:17111160..17111719
Molecular Weight (calculated)
13534.9 Da
IEP (calculated)
8.080
GRAVY (calculated)
0.868
Length
123 amino acids
Sequence
(BLAST)
(BLAST)
001: MLAYFCFLEQ LLVMDMKSSA VAVALTFACI IGLLGSATST TMVKGKYVWI FATIQYSIVV LFGHVFYSKF DPVTCIVIAT VVGFGLTMSG AAVITMFMEW
101: RRSHAHHQPA ITQVATPPFQ TIE
101: RRSHAHHQPA ITQVATPPFQ TIE
001: MVMDDKDKYR EVVEHWSCEG TSPALMVGDS TEITEMLSPS QHQRWRGLVL DIQSREAHGD FLRANGSLIH SPVSKRFKFS PMSSPRTGRR VGSMSPSSSR
101: NRTNQKNFKN RNHSADIEEG VVSPLGDGSD KSYIPRTWSL TNLLAPRKSK KTESFITHSN PESMNGRYAV EVDPVTSMKG ERLLPIRRTR SVPTFFNKDG
201: SVKPSSVFRV IPTPSRGDEK RLEMTQASKL NENDDGGEDV PEEEAVCRIC MVEMEEDEEA FKMECMCKGE LALAHKTCTI KWFTIKGNIT CDVCKQEVRN
301: LPVTLLRVQD SQNRSRAARD IEISRFNNVW QDIPILVIVS MLAYFCFLEQ LLIIDMKSSA VAIALPFSCI IGLLASMIST TMVKKNYVWI YATVQFGFVV
401: LFAQLFYRVV RFDVKQPVMC IVLATMIGFG LTMTGTTAIN EYLKWRRSNS HLPEEPASTQ VV
101: NRTNQKNFKN RNHSADIEEG VVSPLGDGSD KSYIPRTWSL TNLLAPRKSK KTESFITHSN PESMNGRYAV EVDPVTSMKG ERLLPIRRTR SVPTFFNKDG
201: SVKPSSVFRV IPTPSRGDEK RLEMTQASKL NENDDGGEDV PEEEAVCRIC MVEMEEDEEA FKMECMCKGE LALAHKTCTI KWFTIKGNIT CDVCKQEVRN
301: LPVTLLRVQD SQNRSRAARD IEISRFNNVW QDIPILVIVS MLAYFCFLEQ LLIIDMKSSA VAIALPFSCI IGLLASMIST TMVKKNYVWI YATVQFGFVV
401: LFAQLFYRVV RFDVKQPVMC IVLATMIGFG LTMTGTTAIN EYLKWRRSNS HLPEEPASTQ VV
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4KF77]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.