Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY10402 | Canola | mitochondrion | 6.01 | 7.57 |
| CDX70311 | Canola | cytosol | 4.94 | 7.49 |
| CDY10383 | Canola | cytosol, mitochondrion, peroxisome, plasma membrane | 4.51 | 7.24 |
| CDY62901 | Canola | cytosol | 6.01 | 6.68 |
| AT3G09760.1 | Thale cress | nucleus | 6.87 | 6.52 |
| AT5G60580.4 | Thale cress | cytosol, nucleus, peroxisome | 6.65 | 6.28 |
| VIT_08s0040g01950.t01 | Wine grape | cytosol, nucleus, plasma membrane | 6.65 | 6.01 |
| CDY44346 | Canola | cytosol | 5.36 | 6.0 |
| KRH32447 | Soybean | plasma membrane | 6.22 | 5.97 |
| Bra028847.1-P | Field mustard | cytosol | 3.86 | 5.19 |
| Bra009532.1-P | Field mustard | endoplasmic reticulum, extracellular | 1.07 | 4.07 |
| TraesCS6B01G005200.1 | Wheat | cytosol, nucleus, plasma membrane | 3.86 | 3.95 |
| Zm00001d024927_P002 | Maize | cytosol | 4.08 | 3.68 |
| EES10335 | Sorghum | nucleus | 3.86 | 3.47 |
| AT5G18760.1 | Thale cress | plastid | 3.0 | 3.41 |
| AT3G06330.1 | Thale cress | cytosol | 3.0 | 3.29 |
| TraesCS2D01G037600.3 | Wheat | plasma membrane | 3.43 | 3.04 |
| Zm00001d016874_P001 | Maize | cytosol, endoplasmic reticulum, nucleus | 3.22 | 2.95 |
| Os06t0340200-02 | Rice | cytosol, endoplasmic reticulum, peroxisome, plastid | 2.58 | 2.41 |
| EES04310 | Sorghum | plasma membrane | 2.58 | 2.14 |
| Os04t0105100-01 | Rice | plasma membrane | 1.72 | 1.74 |
Protein Annotations
| MapMan:19.2.2.1.5.3.4 | Gene3D:3.30.40.10 | EntrezGene:831897 | ProteinID:AED90565.1 | ProteinID:ANM68511.1 | ArrayExpress:AT5G03180 |
| EnsemblPlantsGene:AT5G03180 | RefSeq:AT5G03180 | TAIR:AT5G03180 | RefSeq:AT5G03180-TAIR-G | EnsemblPlants:AT5G03180.2 | TAIR:AT5G03180.2 |
| Unigene:At.25227 | UniProt:F4KF77 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0008150 |
| GO:GO:0008270 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0046872 | InterPro:IPR011016 | InterPro:IPR013083 |
| InterPro:MARCH-like | RefSeq:NP_001190212.1 | RefSeq:NP_001330262.1 | PFAM:PF12906 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0009005 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0025022 | PO:PO:0025281 |
| PFscan:PS51292 | PANTHER:PTHR23012 | PANTHER:PTHR23012:SF92 | SMART:SM00744 | SUPFAM:SSF57850 | TMHMM:TMhelix |
| UniParc:UPI0001E931BD | InterPro:Znf_RING-CH | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : |
Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4KF77]
Coordinates
chr5:-:753840..756633
Molecular Weight (calculated)
52707.6 Da
IEP (calculated)
8.346
GRAVY (calculated)
-0.284
Length
466 amino acids
Sequence
(BLAST)
(BLAST)
001: MVMDDKDKYR EVVEHWSCEG TSPALMVGDS TEITEMLSPS QHQRWRGLVL DIQSREAHGD FLRANGSLIH SPVSKRFKFS PMSSPRTGRR VGSMSPSSSR
101: NRTNQKNFKN RNHSADIEEG VVSPLGDGSD KSYIPRTWSL TNLLAPRKSK KTESFITHSN PESMNGRYAV EVDPVTSMKG ERLLPIRRTR SVPTFFNKDG
201: SVKPSSVFRV IPTPSRGDEK RLEMTQASKL SKLHDENDDG GEDVPEEEAV CRICMVEMEE DEEAFKMECM CKGELALAHK TCTIKWFTIK GNITCDVCKQ
301: EVRNLPVTLL RVQDSQNRSR AARDIEISRF NNVWQDIPIL VIVSMLAYFC FLEQLLIIDM KSSAVAIALP FSCIIGLLAS MISTTMVKKN YVWIYATVQF
401: GFVVLFAQLF YRVVRFDVKQ PVMCIVLATM IGFGLTMTGT TAINEYLKWR RSNSHLPEEP ASTQVV
101: NRTNQKNFKN RNHSADIEEG VVSPLGDGSD KSYIPRTWSL TNLLAPRKSK KTESFITHSN PESMNGRYAV EVDPVTSMKG ERLLPIRRTR SVPTFFNKDG
201: SVKPSSVFRV IPTPSRGDEK RLEMTQASKL SKLHDENDDG GEDVPEEEAV CRICMVEMEE DEEAFKMECM CKGELALAHK TCTIKWFTIK GNITCDVCKQ
301: EVRNLPVTLL RVQDSQNRSR AARDIEISRF NNVWQDIPIL VIVSMLAYFC FLEQLLIIDM KSSAVAIALP FSCIIGLLAS MISTTMVKKN YVWIYATVQF
401: GFVVLFAQLF YRVVRFDVKQ PVMCIVLATM IGFGLTMTGT TAINEYLKWR RSNSHLPEEP ASTQVV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.