Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- plasma membrane 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d016874_P001 | Maize | cytosol, endoplasmic reticulum, nucleus | 16.01 | 14.37 |
| Os06t0340200-02 | Rice | cytosol, endoplasmic reticulum, peroxisome, plastid | 15.35 | 14.08 |
| EES04310 | Sorghum | plasma membrane | 14.25 | 11.61 |
| CDY41589 | Canola | nucleus | 8.55 | 8.57 |
| CDY41588 | Canola | nucleus | 8.99 | 8.49 |
| KRH19853 | Soybean | cytosol, peroxisome, plasma membrane | 9.21 | 8.35 |
| CDY44728 | Canola | cytosol, nucleus, plasma membrane | 8.33 | 8.1 |
| KRH67679 | Soybean | cytosol | 7.46 | 7.76 |
| Bra029786.1-P | Field mustard | nucleus | 7.68 | 7.69 |
| CDY07939 | Canola | cytosol, nucleus, plasma membrane | 7.46 | 7.56 |
| Bra029787.1-P | Field mustard | nucleus | 7.46 | 7.44 |
| KRG95972 | Soybean | cytosol, nucleus, plasma membrane | 7.24 | 7.33 |
| CDX73994 | Canola | cytosol | 7.46 | 7.13 |
| VIT_08s0040g01950.t01 | Wine grape | cytosol, nucleus, plasma membrane | 7.68 | 6.78 |
| TraesCS7B01G363900.1 | Wheat | cytosol, nucleus, plasma membrane | 7.02 | 6.63 |
| TraesCS2B01G051700.1 | Wheat | cytosol, peroxisome, plasma membrane | 4.39 | 4.05 |
| AT5G03180.2 | Thale cress | nucleus | 3.95 | 3.86 |
Protein Annotations
| EnsemblPlants:TraesCS6B01G005200.1 | EnsemblPlantsGene:TraesCS6B01G005200 | Gene3D:3.30.40.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0008270 |
| InterPro:IPR011016 | InterPro:IPR013083 | InterPro:MARCH-like | InterPro:MFS_trans_sf | InterPro:Znf_RING-CH | InterPro:Znf_RING/FYVE/PHD |
| PANTHER:PTHR23012 | PANTHER:PTHR23012:SF151 | PFAM:PF12906 | PFscan:PS51292 | SEG:seg | SMART:SM00744 |
| SUPFAM:SSF103473 | SUPFAM:SSF57850 | TIGR:cd16495 | TMHMM:TMhelix | MapMan:19.2.2.1.5.3.4 | : |
Description
No Description!
Coordinates
chr6B:-:3881370..3882919
Molecular Weight (calculated)
49676.7 Da
IEP (calculated)
6.246
GRAVY (calculated)
-0.425
Length
456 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPQQESNKD GGAATTPTME EEEEDDEEHH RHGERPLLSA CEQEQEQQQD ADKPLPLPAK RRRSSSSLSR SSRSGEQGWQ EEAAGPGAAR SLSFSRLFNS
101: FRMVTTSSST LDIDELAAAE DGCAEQRQWP SQSKRQHPKP PVCRTQSMPM TSISRRLPAH GGKKRVADSS SLRRFRVSSV QLPLPESAPP PSSPSPSEEG
201: EEEEVGEEEA VCRICMVALL EEEEEGAGDG VLKLECRCKG ELALAHRRCA LKWFGIKGDP NCDVCGHDVL NLPVTLRRVA APPPPPPPPL TAGNGNGSTS
301: QEEEQEARER RGLRGVWRHG TVILVTVSML AYFCFLEQLL VGDHGNAAAA LAVSAPFAVV LGTFSALTTA GMASSRRYVW AYSALQFLLV VLFTHLFYRY
401: VRLQAVIAII LSAFAGFGVA ICANAVLLQA ARWRAAARRP PPPPSDPDHL HQTPQP
101: FRMVTTSSST LDIDELAAAE DGCAEQRQWP SQSKRQHPKP PVCRTQSMPM TSISRRLPAH GGKKRVADSS SLRRFRVSSV QLPLPESAPP PSSPSPSEEG
201: EEEEVGEEEA VCRICMVALL EEEEEGAGDG VLKLECRCKG ELALAHRRCA LKWFGIKGDP NCDVCGHDVL NLPVTLRRVA APPPPPPPPL TAGNGNGSTS
301: QEEEQEARER RGLRGVWRHG TVILVTVSML AYFCFLEQLL VGDHGNAAAA LAVSAPFAVV LGTFSALTTA GMASSRRYVW AYSALQFLLV VLFTHLFYRY
401: VRLQAVIAII LSAFAGFGVA ICANAVLLQA ARWRAAARRP PPPPSDPDHL HQTPQP
001: MMDDKARKEE EHHVSHQHNH SPLQRDGNSA EIAQGQELSS PGRDLWRRGL VLDLPSTTPE DTTRDDLFRR NASLTSSPVA KRVNFSPMSS PRVGQRGASL
101: SPSSSTSSSS RNKPNSLKNL IPKLSFKNRN SNNDNVDIEK AADLGFVSSP SSGNGRDRST WTLTNILTPR LKKTESLPVT PIAHSNPEST HGRFAVDLVT
201: STKKGPPLPI HRSRSVPAFN KDGSQRQLGV FRVIPTPNMS PTRNTIKLND ANVDGAEDVP EEEAVCRICL VELGEDSEAF KMECLCRGEL ALAHKECTIK
301: WFTIKGNRTC DVCKQEVQNL PVTLLRMQNS RGSIGAPDAE AAHYSLWQDV PILVIVSMLA YFCFLEQLLL TKMQSGAIAV SLPFSCVLGL FASMTATTMV
401: PKRYVWIYAT TQFGLVVFFS HIFFTLVRMQ PVVAILLATI VGFGLTMSGT TGIVEFSKWR RSNRTAELPS SSQVDQPLVE TTDQNISGSR N
101: SPSSSTSSSS RNKPNSLKNL IPKLSFKNRN SNNDNVDIEK AADLGFVSSP SSGNGRDRST WTLTNILTPR LKKTESLPVT PIAHSNPEST HGRFAVDLVT
201: STKKGPPLPI HRSRSVPAFN KDGSQRQLGV FRVIPTPNMS PTRNTIKLND ANVDGAEDVP EEEAVCRICL VELGEDSEAF KMECLCRGEL ALAHKECTIK
301: WFTIKGNRTC DVCKQEVQNL PVTLLRMQNS RGSIGAPDAE AAHYSLWQDV PILVIVSMLA YFCFLEQLLL TKMQSGAIAV SLPFSCVLGL FASMTATTMV
401: PKRYVWIYAT TQFGLVVFFS HIFFTLVRMQ PVVAILLATI VGFGLTMSGT TGIVEFSKWR RSNRTAELPS SSQVDQPLVE TTDQNISGSR N
Arabidopsis Description
At3g09760/F8A24.19 [Source:UniProtKB/TrEMBL;Acc:Q940P1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.