Factsheet for Bra029786.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY41589	Canola	nucleus	48.79	48.79
Bra029787.1-P	Field mustard	nucleus	30.11	29.98
Bra009532.1-P	Field mustard	endoplasmic reticulum, extracellular	6.15	22.76
KRG95972	Soybean	cytosol, nucleus, plasma membrane	18.9	19.11
KRH67679	Soybean	cytosol	18.02	18.72
Bra028847.1-P	Field mustard	cytosol	13.63	17.87
VIT_08s0040g01950.t01	Wine grape	cytosol, nucleus, plasma membrane	18.68	16.47
KRH19853	Soybean	cytosol, peroxisome, plasma membrane	17.36	15.71
Os04t0105100-01	Rice	plasma membrane	9.89	9.8
Zm00001d016874_P001	Maize	cytosol, endoplasmic reticulum, nucleus	9.89	8.86
Bra002470.1-P	Field mustard	cytosol, nucleus, plasma membrane	9.01	8.54
Zm00001d024927_P002	Maize	cytosol	9.67	8.51
Bra020240.1-P	Field mustard	cytosol, peroxisome, plasma membrane	9.01	8.33
EES10335	Sorghum	nucleus	9.45	8.3
TraesCS6B01G005200.1	Wheat	cytosol, nucleus, plasma membrane	7.69	7.68
Os06t0340200-02	Rice	cytosol, endoplasmic reticulum, peroxisome, plastid	8.13	7.44
TraesCS2D01G037600.3	Wheat	plasma membrane	8.57	7.4
EES04310	Sorghum	plasma membrane	9.01	7.32
Bra020758.1-P	Field mustard	cytosol	5.05	5.19
Bra001193.1-P	Field mustard	cytosol	3.74	3.9
Bra040226.1-P	Field mustard	cytosol	2.86	3.09
Bra023691.1-P	Field mustard	cytosol	2.42	2.81

Protein Annotations

MapMan:19.2.2.1.5.3.4	Gene3D:3.30.40.10	EnsemblPlantsGene:Bra029786	EnsemblPlants:Bra029786.1	EnsemblPlants:Bra029786.1-P	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0008270	GO:GO:0016020	GO:GO:0016021	GO:GO:0046872
InterPro:IPR011016	InterPro:IPR013083	UniProt:M4ELW6	InterPro:MARCH-like	PFAM:PF12906	PFscan:PS51292
PANTHER:PTHR23012	PANTHER:PTHR23012:SF92	SMART:SM00744	SUPFAM:SSF57850	TMHMM:TMhelix	UniParc:UPI0002547B2E
InterPro:Znf_RING-CH	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

AT3G09760 (E=3e-161) | zinc finger (C3HC4-type RING finger) family protein

Coordinates

chrA05:+:22275650..22277875

Molecular Weight (calculated)

50029.6 Da

IEP (calculated)

6.776

GRAVY (calculated)

-0.299

Length

455 amino acids

Sequence
(BLAST)

001: MDGRDKASEE EQHGVYLQPP PQRDGDSEEE LSRGRDLQVL DLLPATTTPE DTGDDLFSYN TSLTSSPVAK KVNFSTLSSP RIGGPSLSPS SSRNFTNNSL
101: KNLIPKPNKI NEVDIEKAAG LALASSGRDR SSTWSLSNIF TPRRNKTESL PVTPIVHSNP GSTHGGYVAD PVTSMKKGPP LPFHRSRSVP AFNKDGSLRQ
201: SGVFRVIPTP NMSPTRSLYK RNDTGVDGGE DVPEEEAVCR ICLVELGEDS EAFKMECMCR GELALAHKEC TIKWFTIKGN RTCDVCKQEV QNLPVTLLRM
301: QDSQGGATET SHYRQDVPVL VIVSMLAYFC FLEQLLHTKM KSSAIAVALP FSCILGLLAS MTSTTMVEKQ YVWVYGTVQF GFIVCFSHIF FELVHMQPVV
401: SIVLATLVGF GLTMSGTTGL VEFLKWRRRQ RRAEPPSGSQ EDPPSVQTDQ SISVS

Best Arabidopsis Sequence Match ( AT3G09760.1 )
(BLAST)

001: MMDDKARKEE EHHVSHQHNH SPLQRDGNSA EIAQGQELSS PGRDLWRRGL VLDLPSTTPE DTTRDDLFRR NASLTSSPVA KRVNFSPMSS PRVGQRGASL
101: SPSSSTSSSS RNKPNSLKNL IPKLSFKNRN SNNDNVDIEK AADLGFVSSP SSGNGRDRST WTLTNILTPR LKKTESLPVT PIAHSNPEST HGRFAVDLVT
201: STKKGPPLPI HRSRSVPAFN KDGSQRQLGV FRVIPTPNMS PTRNTIKLND ANVDGAEDVP EEEAVCRICL VELGEDSEAF KMECLCRGEL ALAHKECTIK
301: WFTIKGNRTC DVCKQEVQNL PVTLLRMQNS RGSIGAPDAE AAHYSLWQDV PILVIVSMLA YFCFLEQLLL TKMQSGAIAV SLPFSCVLGL FASMTATTMV
401: PKRYVWIYAT TQFGLVVFFS HIFFTLVRMQ PVVAILLATI VGFGLTMSGT TGIVEFSKWR RSNRTAELPS SSQVDQPLVE TTDQNISGSR N

Arabidopsis Description

At3g09760/F8A24.19 [Source:UniProtKB/TrEMBL;Acc:Q940P1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.