Factsheet for Zm00001d016874_P001

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus, cytosol

Predictor Summary:

cytosol 1
mitochondrion 1
endoplasmic reticulum 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	endoplasmic reticulum
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os06t0340200-02	Rice	cytosol, endoplasmic reticulum, peroxisome, plastid	33.46	34.21
EES04310	Sorghum	plasma membrane	31.3	28.39
Zm00001d024927_P002	Maize	cytosol	17.13	16.83
TraesCS6B01G005200.1	Wheat	cytosol, nucleus, plasma membrane	14.37	16.01
Bra029786.1-P	Field mustard	nucleus	8.86	9.89
Bra029787.1-P	Field mustard	nucleus	8.86	9.85
CDY41589	Canola	nucleus	8.66	9.67
CDY44728	Canola	cytosol, nucleus, plasma membrane	8.86	9.59
KRH67679	Soybean	cytosol	7.87	9.13
KRG95972	Soybean	cytosol, nucleus, plasma membrane	8.07	9.11
VIT_08s0040g01950.t01	Wine grape	cytosol, nucleus, plasma membrane	8.86	8.72
KRH19853	Soybean	cytosol, peroxisome, plasma membrane	8.46	8.55
CDY41588	Canola	nucleus	7.68	8.07
CDX73994	Canola	cytosol	7.09	7.55
CDY07939	Canola	cytosol, nucleus, plasma membrane	6.3	7.11
Zm00001d014385_P001	Maize	cytosol, nucleus, plasma membrane, plastid	6.69	7.05
AT5G03180.2	Thale cress	nucleus	2.95	3.22

Protein Annotations

EntrezGene:103627315	MapMan:19.2.2.1.5.3.4	Gene3D:3.30.40.10	UniProt:A0A1D6HAY8	ProteinID:AQK71868.1	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0008270	GO:GO:0016020	GO:GO:0016021	GO:GO:0046872
InterPro:IPR011016	InterPro:IPR013083	InterPro:MARCH-like	PFAM:PF12906	PFscan:PS51292	PANTHER:PTHR23012
PANTHER:PTHR23012:SF151	SMART:SM00744	SUPFAM:SSF57850	TMHMM:TMhelix	UniParc:UPI000220FB25	EnsemblPlantsGene:Zm00001d016874
EnsemblPlants:Zm00001d016874_P001	EnsemblPlants:Zm00001d016874_T001	InterPro:Znf_RING-CH	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

RING/U-box superfamily protein

Coordinates

chr5:+:179020618..179022825

Molecular Weight (calculated)

54253.1 Da

IEP (calculated)

6.548

GRAVY (calculated)

-0.130

Length

508 amino acids

Sequence
(BLAST)

001: MALPKHSQGA GAEVAADGST STSTSPVEDD GGTLDDLGQG QRQGHHEEDN DDDHHFSSSS STGNKHKQTS CLLPARSLRS TDEASHSQQA DCGVRSLSFS
101: KILSFRMWAP GGSSSPTCLE DYIAGQHQLE HDDDEADKLM KQVCRSQSVP ATSVARRRSS GTTAKGKGSR RVADSSSLRR LRVVPLRVPL PPPPPLQDEA
201: ARGTADAIAT TVTTGEEEED QDIAAEEAVC RICMVALSEE AVFKLECCCK GELALAHRAC AIKWFSIKGN GSCDVCSQEV LNLPVTLRRL PDHPSVIQAA
301: AALAQAQAQA QAQGTQADGG GGDPTATTNT TRYRVWHGTP ILIIVSMLAY FCFLEQLLVG DHGTAALAIS LPFACVLGLF SSLSTTKMVS RRYVWIYSAA
401: QFLFIVLFTH IFYRYVRLQA VIAIILSAFA GFSVAICTNY SLLQILRWRR ARHAVASPTS TARAADDGGL HGSSPRDPPS APVAVAVTVA EVDLEMALPP
501: TYAPPAHA

Best Arabidopsis Sequence Match ( AT5G60580.3 )
(BLAST)

001: MATEEKPLNS LDLSHDDSSP ASNQAEGSSA ITEDTSANVQ QWRRKNLSLQ IPSRAAGLSP EDSVVIKMPP TPSPTPRRVN FALTSSSPGP TPTSSSVLPR
101: GKSSLKNLLP KAGCKPKTSN TDIEKGQGNA CSPPASQEKA SISRSLSLSK LFTPRIKRTS SLPVTPVILS NSESAHGGTS VAPQTPNRKG SVHIARSRSV
201: PLNDKELSLK GMDSFFRVIP STPRVKEGDV FSNASEAGNT ETGDADGEDI PEDEAVCRIC LVELCEGGET LKMECSCKGE LALAHKDCAL KWFTIKGNKT
301: CEVCKQEVKN LPVTLLRIQS LRNSGVPQLD VSGYRVWQEV PVLVIISMLA YFCFLEQLLV ENMGTGAIAI SLPFSCILGL LASMTASTMV MRRFVWIYAS
401: VQFALVVLFA HIFYSVVKLQ PVLSVLLSTF AGFGVCICGS SVMVEFVRWR RRWRARRLEQ QLNHALTLSQ PPQPLDPTTS LHHSNTS

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4K0E2]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.