Factsheet for Bra029787.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY44728	Canola	cytosol, nucleus, plasma membrane	64.99	63.33
CDY41588	Canola	nucleus	46.83	44.31
Bra029786.1-P	Field mustard	nucleus	29.98	30.11
KRH19853	Soybean	cytosol, peroxisome, plasma membrane	31.29	28.43
Bra009532.1-P	Field mustard	endoplasmic reticulum, extracellular	5.25	19.51
KRG95972	Soybean	cytosol, nucleus, plasma membrane	18.6	18.89
KRH67679	Soybean	cytosol	17.94	18.72
Bra028847.1-P	Field mustard	cytosol	13.35	17.58
VIT_08s0040g01950.t01	Wine grape	cytosol, nucleus, plasma membrane	18.82	16.67
Os04t0105100-01	Rice	plasma membrane	10.94	10.89
Zm00001d016874_P001	Maize	cytosol, endoplasmic reticulum, nucleus	9.85	8.86
TraesCS2D01G037600.3	Wheat	plasma membrane	10.07	8.73
Os06t0340200-02	Rice	cytosol, endoplasmic reticulum, peroxisome, plastid	9.19	8.45
EES10335	Sorghum	nucleus	9.19	8.11
Zm00001d024927_P002	Maize	cytosol	8.97	7.93
EES04310	Sorghum	plasma membrane	9.63	7.86
TraesCS6B01G005200.1	Wheat	cytosol, nucleus, plasma membrane	7.44	7.46
Bra023691.1-P	Field mustard	cytosol	4.38	5.12
Bra020758.1-P	Field mustard	cytosol	4.6	4.74
Bra001193.1-P	Field mustard	cytosol	3.94	4.13
Bra002470.1-P	Field mustard	cytosol, nucleus, plasma membrane	4.16	3.96
Bra020240.1-P	Field mustard	cytosol, peroxisome, plasma membrane	4.16	3.86
Bra040226.1-P	Field mustard	cytosol	3.28	3.56

Protein Annotations

MapMan:19.2.2.1.5.3.4	Gene3D:3.30.40.10	EnsemblPlantsGene:Bra029787	EnsemblPlants:Bra029787.1	EnsemblPlants:Bra029787.1-P	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0008270	GO:GO:0016020	GO:GO:0016021	GO:GO:0046872
InterPro:IPR011016	InterPro:IPR013083	UniProt:M4ELW7	InterPro:MARCH-like	PFAM:PF12906	PFscan:PS51292
PANTHER:PTHR23012	PANTHER:PTHR23012:SF92	SMART:SM00744	SUPFAM:SSF57850	TMHMM:TMhelix	UniParc:UPI0002547B2D
InterPro:Znf_RING-CH	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

AT3G09760 (E=2e-182) | zinc finger (C3HC4-type RING finger) family protein

Coordinates

chrA05:+:22269959..22272465

Molecular Weight (calculated)

50578.8 Da

IEP (calculated)

9.006

GRAVY (calculated)

-0.258

Length

457 amino acids

Sequence
(BLAST)

001: MDDRDKALEE EHKDGDSAEI ADEEQLWRRG IVSSRPPQDT GDDLLRRNAS LTSSPIAKRV NFSPMPSPRI FQRGASLSPC SSSSRNRPNN SLKSLIPKLT
101: FKNKNSSNSN MDIEKAADLA FGASPPSSGN ARERSTWTLS NILAPRLKKT ESLPVTPIAH SNPGSTHGRY VVDQVASMKK GPPLPIHRSR SVPAFNKDGS
201: LRQSGVFRVI PTPNRTPTRN INKLDDTNVD GGEDVPEEEA VCRICMVELG EDSEAFKMEC MCRGELALAH KECTIKWFTI KGNRTCDVCK QEVQNLPVTL
301: LRLQDSHFNL GAIEATHFRQ DVPILVIVSM LAYFCFLEQL LLTKMKSGAI AISLPFSCVF GLLASMTSTT MVKKQYVWIY GTIQFGLVVF FSHIFFSLVH
401: MQPVVSILLA TVFGFGLTMS SATGIVEFSK WRRRRRTAEL PSSSQVDPPP VQSISGS

Best Arabidopsis Sequence Match ( AT3G09760.1 )
(BLAST)

001: MMDDKARKEE EHHVSHQHNH SPLQRDGNSA EIAQGQELSS PGRDLWRRGL VLDLPSTTPE DTTRDDLFRR NASLTSSPVA KRVNFSPMSS PRVGQRGASL
101: SPSSSTSSSS RNKPNSLKNL IPKLSFKNRN SNNDNVDIEK AADLGFVSSP SSGNGRDRST WTLTNILTPR LKKTESLPVT PIAHSNPEST HGRFAVDLVT
201: STKKGPPLPI HRSRSVPAFN KDGSQRQLGV FRVIPTPNMS PTRNTIKLND ANVDGAEDVP EEEAVCRICL VELGEDSEAF KMECLCRGEL ALAHKECTIK
301: WFTIKGNRTC DVCKQEVQNL PVTLLRMQNS RGSIGAPDAE AAHYSLWQDV PILVIVSMLA YFCFLEQLLL TKMQSGAIAV SLPFSCVLGL FASMTATTMV
401: PKRYVWIYAT TQFGLVVFFS HIFFTLVRMQ PVVAILLATI VGFGLTMSGT TGIVEFSKWR RSNRTAELPS SSQVDQPLVE TTDQNISGSR N

Arabidopsis Description

At3g09760/F8A24.19 [Source:UniProtKB/TrEMBL;Acc:Q940P1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.