Factsheet for Bra028847.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY62901	Canola	cytosol	59.65	49.4
CDY44346	Canola	cytosol	53.03	44.12
Bra009532.1-P	Field mustard	endoplasmic reticulum, extracellular	9.8	27.64
CDX70311	Canola	cytosol	12.1	13.68
Bra029786.1-P	Field mustard	nucleus	17.87	13.63
Bra029787.1-P	Field mustard	nucleus	17.58	13.35
Bra020758.1-P	Field mustard	cytosol	6.05	4.74
KRH32447	Soybean	plasma membrane	6.34	4.53
Bra001193.1-P	Field mustard	cytosol	5.19	4.13
AT5G03180.2	Thale cress	nucleus	5.19	3.86
Bra040226.1-P	Field mustard	cytosol	4.32	3.56
Bra002470.1-P	Field mustard	cytosol, nucleus, plasma membrane	3.46	2.5
Bra023691.1-P	Field mustard	cytosol	2.59	2.3
Bra020240.1-P	Field mustard	cytosol, peroxisome, plasma membrane	3.17	2.24

Protein Annotations

EnsemblPlants:Bra028847.1	EnsemblPlants:Bra028847.1-P	EnsemblPlantsGene:Bra028847	Gene3D:3.30.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0008270	GO:GO:0046872	InterPro:IPR011016	InterPro:IPR013083	InterPro:MARCH-like	InterPro:Znf_RING-CH
InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR23012	PANTHER:PTHR23012:SF92	PFAM:PF12906	PFscan:PS51292	SEG:seg
SMART:SM00744	SUPFAM:SSF57850	UniParc:UPI00025436AE	UniProt:M4EJ81	MapMan:19.2.2.1.5.3.4	:

Description

AT5G03180 (E=5e-074) | zinc finger (C3HC4-type RING finger) family protein

Coordinates

chrA02:-:1764466..1766245

Molecular Weight (calculated)

38930.4 Da

IEP (calculated)

7.252

GRAVY (calculated)

-0.499

Length

347 amino acids

Sequence
(BLAST)

001: MMDVDKPPQD ISPAIMDAEI TREEISPSQH ERWRCLVLDI ELRAQEDSHG SKRFNFSPMA SPRIGPSSSS RRRTNLKNVF TFRNRNNNAA DIEEGSALVS
101: NIPRTWSLTN LLTLRKSNKT ESLPVTPLVH SNPESMHGSY TVDDDQVREH TLPIRRSRSV PTLIDKDGNA KPLGLLRVIP TPSRLDTKTS NDHDGGENVP
201: EEEAVCRICM VELGEDSEAF KMECMCKGEL ALSHKACTIK WFTIKGNITC DVCKQVVKNL PVTLLRVEDS SSQDRSRRTL NQWQDVPVLV ILKQPVVCIV
301: LATMIGFGLT MSGTTAINEL FKWRRSHSHH QEPVSTQVAP PQSQTAE

Best Arabidopsis Sequence Match ( AT5G03180.1 )
(BLAST)

001: MVMDDKDKYR EVVEHWSCEG TSPALMVGDS TEITEMLSPS QHQRWRGLVL DIQSREAHGD FLRANGSLIH SPVSKRFKFS PMSSPRTGRR VGSMSPSSSR
101: NRTNQKNFKN RNHSADIEEG VVSPLGDGSD KSYIPRTWSL TNLLAPRKSK KTESFITHSN PESMNGRYAV EVDPVTSMKG ERLLPIRRTR SVPTFFNKDG
201: SVKPSSVFRV IPTPSRGDEK RLEMTQASKL NENDDGGEDV PEEEAVCRIC MVEMEEDEEA FKMECMCKGE LALAHKTCTI KWFTIKGNIT CDVCKQEVRN
301: LPVTLLRVQD SQNRSRAARD IEISRFNNVW QDIPILVIVS MLAYFCFLEQ LLIIDMKSSA VAIALPFSCI IGLLASMIST TMVKKNYVWI YATVQFGFVV
401: LFAQLFYRVV RFDVKQPVMC IVLATMIGFG LTMTGTTAIN EYLKWRRSNS HLPEEPASTQ VV

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4KF77]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.