Factsheet for Zm00001d014385_P001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid, nucleus, cytosol

Predictor Summary:

plastid 1
cytosol 1
mitochondrion 1
plasma membrane 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER88810	Sorghum	cytosol, nucleus, plasma membrane, plastid	92.53	92.34
Os06t0677300-01	Rice	plasma membrane	80.29	80.12
GSMUA_Achr11P...	Banana	endoplasmic reticulum, plasma membrane, vacuole	17.43	56.0
TraesCS7B01G363900.1	Wheat	cytosol, nucleus, plasma membrane	32.78	32.71
TraesCS7A01G463200.1	Wheat	cytosol, nucleus, plasma membrane	31.33	31.13
TraesCS7D01G451000.1	Wheat	cytosol, nucleus, plasma membrane	30.71	30.52
HORVU0Hr1G022270.4	Barley	plastid	30.91	27.24
GSMUA_Achr5P00540_001	Banana	cytosol, nucleus, plasma membrane	26.76	25.54
Solyc07g044780.2.1	Tomato	cytosol	22.2	20.7
VIT_12s0028g01200.t01	Wine grape	cytosol, endoplasmic reticulum, peroxisome	15.35	14.18
Os02t0165000-01	Rice	plasma membrane	14.32	14.17
KRH17646	Soybean	cytosol, peroxisome, plasma membrane	13.69	14.16
KRH74078	Soybean	cytosol	13.49	12.57
KRH14034	Soybean	plasma membrane	11.62	10.69
Zm00001d016874_P001	Maize	cytosol, endoplasmic reticulum, nucleus	7.05	6.69
CDY69891	Canola	plasma membrane	2.28	5.91
Zm00001d024927_P002	Maize	cytosol	5.81	5.42

Protein Annotations

EntrezGene:100304255	MapMan:19.2.2.1.5.3.4	Gene3D:3.30.40.10	ProteinID:AQK66097.1	EMBL:BT060606	UniProt:C0HE50
GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0008270	GO:GO:0016020	GO:GO:0016021
GO:GO:0046872	InterPro:IPR011016	InterPro:IPR013083	InterPro:MARCH-like	PFAM:PF12906	PFscan:PS51292
PANTHER:PTHR23012	PANTHER:PTHR23012:SF118	SMART:SM00744	SUPFAM:SSF57850	TMHMM:TMhelix	UniParc:UPI00019488BD
EnsemblPlantsGene:Zm00001d014385	EnsemblPlants:Zm00001d014385_P001	EnsemblPlants:Zm00001d014385_T001	InterPro:Znf_RING-CH	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

RING/U-box superfamily protein

Coordinates

chr5:-:43923685..43927702

Molecular Weight (calculated)

52548.3 Da

IEP (calculated)

8.411

GRAVY (calculated)

-0.325

Length

482 amino acids

Sequence
(BLAST)

001: MESAEGPSPY SGDRAAPVQD GNGQTTPGHN SRRPNLSLQI PARTLDTNIP SSTRVTISCS PSSTRVGLPP RPNSTRTKSS IKNMNPQHSF RARSSAQEGD
101: RVVLLNPGTS SEGQQDNPST ARSFSFRKVI NSLSAKRTHS LPVTPVGTTD KAASPPNQLD TLPTTTNEGV EAKIRRSLSV PGNRKNRSLR RADSLGVIRV
201: IPTTPRPVPV EATTSSDIIE ETIDVPEDGG EDIPEEEAVC RICFVELNEG GETLKMECSC KGELALAHQD CAVKWFSIKG NKICDVCKQE VQNLPVMLLR
301: IPTQTANRRV ANAAQQRAAQ QYRFWQDIPI LVMVSMLAYF CFLEQLLVTD LQSRALAISL PFSCVLGLLS SMIASTMVSK SYLWAYASFQ FAIVILFAHI
401: FYNVLKVNPV LAVLLSSFTG FGIAISTNSL LVEYLRWRAR RNQRLAQQAA NAAQHQESGN DGGNDNDDAQ QGHDPNSGNN AV

Best Arabidopsis Sequence Match ( AT5G60580.3 )
(BLAST)

001: MATEEKPLNS LDLSHDDSSP ASNQAEGSSA ITEDTSANVQ QWRRKNLSLQ IPSRAAGLSP EDSVVIKMPP TPSPTPRRVN FALTSSSPGP TPTSSSVLPR
101: GKSSLKNLLP KAGCKPKTSN TDIEKGQGNA CSPPASQEKA SISRSLSLSK LFTPRIKRTS SLPVTPVILS NSESAHGGTS VAPQTPNRKG SVHIARSRSV
201: PLNDKELSLK GMDSFFRVIP STPRVKEGDV FSNASEAGNT ETGDADGEDI PEDEAVCRIC LVELCEGGET LKMECSCKGE LALAHKDCAL KWFTIKGNKT
301: CEVCKQEVKN LPVTLLRIQS LRNSGVPQLD VSGYRVWQEV PVLVIISMLA YFCFLEQLLV ENMGTGAIAI SLPFSCILGL LASMTASTMV MRRFVWIYAS
401: VQFALVVLFA HIFYSVVKLQ PVLSVLLSTF AGFGVCICGS SVMVEFVRWR RRWRARRLEQ QLNHALTLSQ PPQPLDPTTS LHHSNTS

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4K0E2]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.