Factsheet for Solyc07g044780.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	endoplasmic reticulum, plasma membrane, vacuole	18.76	64.67
GSMUA_Achr5P00540_001	Banana	cytosol, nucleus, plasma membrane	42.17	43.17
TraesCS7D01G451000.1	Wheat	cytosol, nucleus, plasma membrane	29.59	31.55
TraesCS7A01G463200.1	Wheat	cytosol, nucleus, plasma membrane	29.4	31.34
TraesCS7B01G363900.1	Wheat	cytosol, nucleus, plasma membrane	27.85	29.81
HORVU0Hr1G022270.4	Barley	plastid	30.56	28.88
Os06t0677300-01	Rice	plasma membrane	21.66	23.19
EER88810	Sorghum	cytosol, nucleus, plasma membrane, plastid	21.47	22.98
Zm00001d014385_P001	Maize	cytosol, nucleus, plasma membrane, plastid	20.7	22.2
VIT_12s0028g01200.t01	Wine grape	cytosol, endoplasmic reticulum, peroxisome	15.28	15.13
KRH14034	Soybean	plasma membrane	11.41	11.26
KRH17646	Soybean	cytosol, peroxisome, plasma membrane	10.06	11.16
Os02t0165000-01	Rice	plasma membrane	10.44	11.09
KRH74078	Soybean	cytosol	10.06	10.06
CDY69891	Canola	plasma membrane	1.93	5.38
Solyc01g067800.2.1	Tomato	plastid	3.29	4.43
Solyc09g007680.2.1	Tomato	cytosol, nucleus, plasma membrane	4.26	4.25
Solyc11g069350.1.1	Tomato	cytosol, nucleus, plasma membrane	4.06	4.02
Solyc06g016770.2.1	Tomato	cytosol, nucleus, plasma membrane	3.87	3.97

Protein Annotations

MapMan:19.2.2.1.5.3.4	Gene3D:3.30.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0008270
GO:GO:0016020	GO:GO:0016021	GO:GO:0046872	InterPro:IPR011016	InterPro:IPR013083	UniProt:K4CEN6
InterPro:MARCH-like	PFAM:PF12906	PFscan:PS51292	PANTHER:PTHR23012	PANTHER:PTHR23012:SF118	SMART:SM00744
SUPFAM:SSF57850	EnsemblPlantsGene:Solyc07g044780.2	EnsemblPlants:Solyc07g044780.2.1	TMHMM:TMhelix	UniParc:UPI000276C7E7	InterPro:Znf_RING-CH
InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr7:+:57817581..57832642

Molecular Weight (calculated)

57578.8 Da

IEP (calculated)

8.550

GRAVY (calculated)

-0.316

Length

517 amino acids

Sequence
(BLAST)

001: MENSVQEMHQ TQPEFDSSAH SNTNGEREEA TLVQQQSTRR PNLSSLQIPT RSLENALSSF TRIDVPSPNS ARSGLPPRPH SAKFMSSMKN LIPQKSTRAK
101: NVTHDGEKTV LIIPDMPLSD KPSTSRSFSL NKVLFSSTTK SIRSLPETPM GTVEKPAEDN CLDDHSELIK PEALQHMKRS FSVPIHVKSG SLRRTDSNGG
201: LIRVISKVVR TTTDSDASAD IPQETENATD NTGEDIPEEK AVCRICFVEL GEESETFKME CSCKGELALA HKACTLKWFS IKGNKICDVC KQEVRNLPVT
301: LLKIQNPPTA ARRSQTVTQQ REVPRYRVWQ DVPILVMVSM LAYFCFLEQL LVSDLGARAL AISLPFSCVL GLLSSLIAST MVGKSYIWAY ASFQFAIVIL
401: FAHIFYAVLN VSALLSVLLS SFTGFGIAIS TNSLLVEYLR WRSSRRLRSS PAQTTSTVQL HSTLPVQRYF SYIDNPSGQQ YHHNHRPHNN QQQQQPLHPV
501: VGQSENPGLP EIRIQTA

Best Arabidopsis Sequence Match ( AT5G60580.3 )
(BLAST)

001: MATEEKPLNS LDLSHDDSSP ASNQAEGSSA ITEDTSANVQ QWRRKNLSLQ IPSRAAGLSP EDSVVIKMPP TPSPTPRRVN FALTSSSPGP TPTSSSVLPR
101: GKSSLKNLLP KAGCKPKTSN TDIEKGQGNA CSPPASQEKA SISRSLSLSK LFTPRIKRTS SLPVTPVILS NSESAHGGTS VAPQTPNRKG SVHIARSRSV
201: PLNDKELSLK GMDSFFRVIP STPRVKEGDV FSNASEAGNT ETGDADGEDI PEDEAVCRIC LVELCEGGET LKMECSCKGE LALAHKDCAL KWFTIKGNKT
301: CEVCKQEVKN LPVTLLRIQS LRNSGVPQLD VSGYRVWQEV PVLVIISMLA YFCFLEQLLV ENMGTGAIAI SLPFSCILGL LASMTASTMV MRRFVWIYAS
401: VQFALVVLFA HIFYSVVKLQ PVLSVLLSTF AGFGVCICGS SVMVEFVRWR RRWRARRLEQ QLNHALTLSQ PPQPLDPTTS LHHSNTS

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4K0E2]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.