Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400074985 | Potato | cytosol, nucleus, plasma membrane | 72.22 | 72.95 |
| GSMUA_Achr11P... | Banana | plasma membrane | 8.13 | 35.34 |
| Solyc09g007680.2.1 | Tomato | cytosol, nucleus, plasma membrane | 4.96 | 4.83 |
| Solyc11g069350.1.1 | Tomato | cytosol, nucleus, plasma membrane | 4.76 | 4.59 |
| Solyc07g044780.2.1 | Tomato | cytosol | 3.97 | 3.87 |
| Bra023691.1-P | Field mustard | cytosol | 1.79 | 2.3 |
| CDY47182 | Canola | cytosol | 1.79 | 2.3 |
| AT5G18760.1 | Thale cress | plastid | 1.79 | 2.19 |
| CDY02603 | Canola | cytosol, peroxisome, plasma membrane | 1.59 | 2.07 |
| KRH20994 | Soybean | cytosol | 1.19 | 1.95 |
| Solyc01g067800.2.1 | Tomato | plastid | 0.99 | 1.3 |
Protein Annotations
| MapMan:19.2.2.1.5.3.4 | Gene3D:3.30.40.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0008270 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0046872 | InterPro:IPR011016 | InterPro:IPR013083 | UniProt:K4C4A4 |
| InterPro:MARCH-like | PFAM:PF12906 | PFscan:PS51292 | PANTHER:PTHR23012 | PANTHER:PTHR23012:SF25 | SMART:SM00744 |
| SUPFAM:SSF57850 | EnsemblPlantsGene:Solyc06g016770.2 | EnsemblPlants:Solyc06g016770.2.1 | TMHMM:TMhelix | UniParc:UPI0002767472 | InterPro:Znf_RING-CH |
| InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr6:+:13498295..13502757
Molecular Weight (calculated)
56196.5 Da
IEP (calculated)
8.486
GRAVY (calculated)
-0.223
Length
504 amino acids
Sequence
(BLAST)
(BLAST)
001: MMKCEAKDKS MAEVYDEYVR SSVCERVAIQ IPQGESSSGI TEESEHAKQW KRPNLFVEIP SKSSDAANQE SVQVKMLSTP TPTPKRVNFL LTPSPSNSRV
101: NAFPSPSSCR GKSSIKNLLP RLSFKLRNMN SDTEKATLPD SDTSAMVPQE KVSIPRSWSF TKLFTPRVKR TSSLPVTPID HSNPESASGS MSRALTFGPK
201: ETQLRISRSL SLPVINKDRR TRRVESFFRV IPSTPQGKDG DSTVPAKVSE DEEPNGEDIP EEEAVCRICL VELCEGGETL KMECSCKGEL ALAHQECAFK
301: WFSVKGNRTC DVCKQEVRNL PVTLRRLQSA NVGSNSFQHL EINRFRVSQE LPILVIVSML AYFCFLEQLL VGSMGTGAIA ISVPFSCVLG LLSSLASSTM
401: VKRRFVWVYA SIQFILVVFF AHMFYSLVHV QVVLSILLST FAGLGVAMCG CSILIEFFRW KRRRQASLDQ HQNSQLNQTE IPSHISTRQD YQVDLENPGT
501: VSSQ
101: NAFPSPSSCR GKSSIKNLLP RLSFKLRNMN SDTEKATLPD SDTSAMVPQE KVSIPRSWSF TKLFTPRVKR TSSLPVTPID HSNPESASGS MSRALTFGPK
201: ETQLRISRSL SLPVINKDRR TRRVESFFRV IPSTPQGKDG DSTVPAKVSE DEEPNGEDIP EEEAVCRICL VELCEGGETL KMECSCKGEL ALAHQECAFK
301: WFSVKGNRTC DVCKQEVRNL PVTLRRLQSA NVGSNSFQHL EINRFRVSQE LPILVIVSML AYFCFLEQLL VGSMGTGAIA ISVPFSCVLG LLSSLASSTM
401: VKRRFVWVYA SIQFILVVFF AHMFYSLVHV QVVLSILLST FAGLGVAMCG CSILIEFFRW KRRRQASLDQ HQNSQLNQTE IPSHISTRQD YQVDLENPGT
501: VSSQ
001: MATEEKPLNS LDLSHDDSSP ASNQAEGSSA ITEDTSANVQ QWRRKNLSLQ IPSRAAGLSP EDSVVIKMPP TPSPTPRRVN FALTSSSPGP TPTSSSVLPR
101: GKSSLKNLLP KAGCKPKTSN TDIEKGQGNA CSPPASQEKA SISRSLSLSK LFTPRIKRTS SLPVTPVILS NSESAHGGTS VAPQTPNRKG SVHIARSRSV
201: PLNDKELSLK GMDSFFRVIP STPRVKEGDV FSNASEAGNT ETGDADGEDI PEDEAVCRIC LVELCEGGET LKMECSCKGE LALAHKDCAL KWFTIKGNKT
301: CEVCKQEVKN LPVTLLRIQS LRNSGVPQLD VSGYRVWQEV PVLVIISMLA YFCFLEQLLV ENMGTGAIAI SLPFSCILGL LASMTASTMV MRRFVWIYAS
401: VQFALVVLFA HIFYSVVKLQ PVLSVLLSTF AGFGVCICGS SVMVEFVRWR RRWRARRLEQ QLNHALTLSQ PPQPLDPTTS LHHSNTS
101: GKSSLKNLLP KAGCKPKTSN TDIEKGQGNA CSPPASQEKA SISRSLSLSK LFTPRIKRTS SLPVTPVILS NSESAHGGTS VAPQTPNRKG SVHIARSRSV
201: PLNDKELSLK GMDSFFRVIP STPRVKEGDV FSNASEAGNT ETGDADGEDI PEDEAVCRIC LVELCEGGET LKMECSCKGE LALAHKDCAL KWFTIKGNKT
301: CEVCKQEVKN LPVTLLRIQS LRNSGVPQLD VSGYRVWQEV PVLVIISMLA YFCFLEQLLV ENMGTGAIAI SLPFSCILGL LASMTASTMV MRRFVWIYAS
401: VQFALVVLFA HIFYSVVKLQ PVLSVLLSTF AGFGVCICGS SVMVEFVRWR RRWRARRLEQ QLNHALTLSQ PPQPLDPTTS LHHSNTS
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4K0E2]
SUBAcon: [peroxisome,nucleus,cytosol]
SUBAcon: [peroxisome,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.