Factsheet for GSMUA_Achr11P18500_001

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, vacuole, plasma membrane

Predictor Summary:

plastid 1
extracellular 4
endoplasmic reticulum 5
vacuole 5
plasma membrane 6
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, plasma membrane, vacuole
Any Predictor:	plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P00540_001	Banana	cytosol, nucleus, plasma membrane	76.0	22.57
TraesCS7B01G363900.1	Wheat	cytosol, nucleus, plasma membrane	65.33	20.29
TraesCS7D01G451000.1	Wheat	cytosol, nucleus, plasma membrane	64.0	19.79
TraesCS7A01G463200.1	Wheat	cytosol, nucleus, plasma membrane	64.0	19.79
Solyc07g044780.2.1	Tomato	cytosol	64.67	18.76
HORVU0Hr1G022270.4	Barley	plastid	64.67	17.73
Zm00001d014385_P001	Maize	cytosol, nucleus, plasma membrane, plastid	56.0	17.43
EER88810	Sorghum	cytosol, nucleus, plasma membrane, plastid	56.0	17.39
Os06t0677300-01	Rice	plasma membrane	55.33	17.18
CDY69891	Canola	plasma membrane	8.67	6.99
VIT_12s0028g01200.t01	Wine grape	cytosol, endoplasmic reticulum, peroxisome	22.0	6.32
GSMUA_Achr11P...	Banana	plasma membrane	4.67	6.03
KRH17646	Soybean	cytosol, peroxisome, plasma membrane	18.0	5.79
Os02t0165000-01	Rice	plasma membrane	17.33	5.34
KRH74078	Soybean	cytosol	17.33	5.03
KRH14034	Soybean	plasma membrane	16.67	4.77
GSMUA_Achr1P11310_001	Banana	cytosol, nucleus, plasma membrane	4.0	1.43
GSMUA_Achr11P...	Banana	cytosol	2.0	0.72
GSMUA_Achr11P...	Banana	cytosol, nucleus, plastid	3.33	0.14

Protein Annotations

EnsemblPlants:GSMUA_Achr11P18500_001	EnsemblPlants:GSMUA_Achr11T18500_001	EnsemblPlantsGene:GSMUA_Achr11G18500_001	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:MARCH-like	ncoils:Coil	PANTHER:PTHR23012	PANTHER:PTHR23012:SF118	SEG:seg	TMHMM:TMhelix
UniParc:UPI000295E046	UniProt:M0RTD0	MapMan:19.2.2.1.5.3.4	:	:	:

Description

zinc finger, C3HC4 type, domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr11G18500_001]

Coordinates

chr11:+:19872498..19873337

Molecular Weight (calculated)

17203.0 Da

IEP (calculated)

8.734

GRAVY (calculated)

0.259

Length

150 amino acids

Sequence
(BLAST)

001: MVSMLAYFCF LEQLLVTEMA SRALAVSLPF SCVLGLLSSM IASIMVTKSY IWAYASFQFA IVILFAHIFY NVLRVSPVIS VLLSSFTGFG IAISMKSLIV
101: EFLRWRHRRH VHLAQQQNDS RQQQESRNLS EAENDRQQES ERQIQNPNPL

Best Arabidopsis Sequence Match ( AT5G60580.3 )
(BLAST)

001: MATEEKPLNS LDLSHDDSSP ASNQAEGSSA ITEDTSANVQ QWRRKNLSLQ IPSRAAGLSP EDSVVIKMPP TPSPTPRRVN FALTSSSPGP TPTSSSVLPR
101: GKSSLKNLLP KAGCKPKTSN TDIEKGQGNA CSPPASQEKA SISRSLSLSK LFTPRIKRTS SLPVTPVILS NSESAHGGTS VAPQTPNRKG SVHIARSRSV
201: PLNDKELSLK GMDSFFRVIP STPRVKEGDV FSNASEAGNT ETGDADGEDI PEDEAVCRIC LVELCEGGET LKMECSCKGE LALAHKDCAL KWFTIKGNKT
301: CEVCKQEVKN LPVTLLRIQS LRNSGVPQLD VSGYRVWQEV PVLVIISMLA YFCFLEQLLV ENMGTGAIAI SLPFSCILGL LASMTASTMV MRRFVWIYAS
401: VQFALVVLFA HIFYSVVKLQ PVLSVLLSTF AGFGVCICGS SVMVEFVRWR RRWRARRLEQ QLNHALTLSQ PPQPLDPTTS LHHSNTS

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4K0E2]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.