CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
plastid 1
cytosol 1
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d014385_P001	Maize	cytosol, nucleus, plasma membrane, plastid	92.34	92.53
Os06t0677300-01	Rice	plasma membrane	79.09	79.09
GSMUA_Achr11P...	Banana	endoplasmic reticulum, plasma membrane, vacuole	17.39	56.0
TraesCS7B01G363900.1	Wheat	cytosol, nucleus, plasma membrane	32.09	32.09
TraesCS7D01G451000.1	Wheat	cytosol, nucleus, plasma membrane	31.06	30.93
TraesCS7A01G463200.1	Wheat	cytosol, nucleus, plasma membrane	30.85	30.72
HORVU0Hr1G022270.4	Barley	plastid	31.26	27.61
GSMUA_Achr5P00540_001	Banana	cytosol, nucleus, plasma membrane	27.12	25.94
Solyc07g044780.2.1	Tomato	cytosol	22.98	21.47
VIT_12s0028g01200.t01	Wine grape	cytosol, endoplasmic reticulum, peroxisome	15.53	14.37
Os02t0165000-01	Rice	plasma membrane	14.08	13.96
KRH17646	Soybean	cytosol, peroxisome, plasma membrane	12.84	13.3
KRH74078	Soybean	cytosol	13.04	12.19
KRH14034	Soybean	plasma membrane	12.22	11.26
EES10335	Sorghum	nucleus	6.83	6.37
CDY69891	Canola	plasma membrane	2.07	5.38
EES04310	Sorghum	plasma membrane	6.0	5.18

Protein Annotations

MapMan:19.2.2.1.5.3.4	Gene3D:3.30.40.10	EntrezGene:8061609	UniProt:C5Z7U0	EnsemblPlants:EER88810	ProteinID:EER88810
ProteinID:EER88810.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0008270	GO:GO:0016020
GO:GO:0016021	GO:GO:0046872	InterPro:IPR011016	InterPro:IPR013083	InterPro:MARCH-like	PFAM:PF12906
PFscan:PS51292	PANTHER:PTHR23012	PANTHER:PTHR23012:SF118	SMART:SM00744	EnsemblPlantsGene:SORBI_3010G228400	SUPFAM:SSF57850
unigene:Sbi.9516	TMHMM:TMhelix	UniParc:UPI0001A88F58	RefSeq:XP_002437443.1	InterPro:Znf_RING-CH	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr10:+:57149491..57154027

Molecular Weight (calculated)

52690.4 Da

IEP (calculated)

8.953

GRAVY (calculated)

-0.319

Length

483 amino acids

Sequence
(BLAST)

001: MENSEGPSPD SGDRTAPVQD VDAQTTPGYN SRRPNLSLQI PARTLDTSVQ TSTRVTISPS PSSTRVGLPP RPNSTRTKSS IKNINPQNSF RARSSAQEGD
101: RVVLLNPGTS SEGQQDNPTT ARSFSFRKVI SSLSAKRTHS LPVTPVGTTD KTASPANQLD TLPTTSTEGV EAKIRRSLSV PGNRKNRSLR RADSIGVIRV
201: IPTTPRSVPV DATTSNDVIE ETIDVPENGG EDIPEEEAVC RICFIELNEG GETLKMECSC KGELALAHQD CAVKWFSIKG NKICDVCKQE VQNLPVTLLR
301: IPTQTANRRV ANAAQQRAAQ QYRFWQDIPI LVMVSMLAYF CFLEQLLVTN LQSRALAISL PFSCVLGLLS SMIASTMVSK SYLWAYASFQ FAIVILFAHI
401: FYNVLRVNPV LAVLLSSFTG FGIAISTNSL LVEYLRWRAR RNHRLAQQAA NAAQHQESGN DGANDNDGAR QQGRDANSGN NAV

Best Arabidopsis Sequence Match ( AT5G60580.3 )
(BLAST)

001: MATEEKPLNS LDLSHDDSSP ASNQAEGSSA ITEDTSANVQ QWRRKNLSLQ IPSRAAGLSP EDSVVIKMPP TPSPTPRRVN FALTSSSPGP TPTSSSVLPR
101: GKSSLKNLLP KAGCKPKTSN TDIEKGQGNA CSPPASQEKA SISRSLSLSK LFTPRIKRTS SLPVTPVILS NSESAHGGTS VAPQTPNRKG SVHIARSRSV
201: PLNDKELSLK GMDSFFRVIP STPRVKEGDV FSNASEAGNT ETGDADGEDI PEDEAVCRIC LVELCEGGET LKMECSCKGE LALAHKDCAL KWFTIKGNKT
301: CEVCKQEVKN LPVTLLRIQS LRNSGVPQLD VSGYRVWQEV PVLVIISMLA YFCFLEQLLV ENMGTGAIAI SLPFSCILGL LASMTASTMV MRRFVWIYAS
401: VQFALVVLFA HIFYSVVKLQ PVLSVLLSTF AGFGVCICGS SVMVEFVRWR RRWRARRLEQ QLNHALTLSQ PPQPLDPTTS LHHSNTS

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4K0E2]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.