Factsheet for Os06t0677300-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, mitochondrion, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	nucleus

plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d014385_P001	Maize	cytosol, nucleus, plasma membrane, plastid	80.12	80.29
EER88810	Sorghum	cytosol, nucleus, plasma membrane, plastid	79.09	79.09
GSMUA_Achr11P...	Banana	endoplasmic reticulum, plasma membrane, vacuole	17.18	55.33
GSMUA_Achr5P00540_001	Banana	cytosol, nucleus, plasma membrane	26.09	24.95
Solyc07g044780.2.1	Tomato	cytosol	23.19	21.66
VIT_12s0028g01200.t01	Wine grape	cytosol, endoplasmic reticulum, peroxisome	16.15	14.94
KRH17646	Soybean	cytosol, peroxisome, plasma membrane	13.46	13.95
Os02t0165000-01	Rice	plasma membrane	13.25	13.14
KRH74078	Soybean	cytosol	13.46	12.57
KRH14034	Soybean	plasma membrane	12.42	11.45
Os04t0105100-01	Rice	plasma membrane	7.25	7.63
Os06t0340200-02	Rice	cytosol, endoplasmic reticulum, peroxisome, plastid	6.21	6.04
CDY69891	Canola	plasma membrane	2.28	5.91

Protein Annotations

MapMan:19.2.2.1.5.3.4	Gene3D:3.30.40.10	EntrezGene:4341836	EMBL:AK100432	ProteinID:BAD45521.1	ProteinID:BAD45918.1
ProteinID:BAF20269.2	ProteinID:BAS99113.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004616
GO:GO:0005488	GO:GO:0005575	GO:GO:0006574	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270
GO:GO:0008442	GO:GO:0009056	GO:GO:0009083	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016491	GO:GO:0046872	GO:GO:0051287	GO:GO:0055114	InterPro:IPR011016	InterPro:IPR013083
InterPro:MARCH-like	EnsemblPlantsGene:Os06g0677300	EnsemblPlants:Os06t0677300-01	PFAM:PF12906	PFscan:PS51292	PANTHER:PTHR23012
PANTHER:PTHR23012:SF118	UniProt:Q653U9	SMART:SM00744	SUPFAM:SSF57850	TMHMM:TMhelix	UniParc:UPI000043A301
RefSeq:XP_015644308.1	InterPro:Znf_RING-CH	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

RING finger protein OsRFPV-5, RING-V protein 5Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os06t0677300-01)

Coordinates

chr6:+:28133801..28138094

Molecular Weight (calculated)

52838.7 Da

IEP (calculated)

8.639

GRAVY (calculated)

-0.325

Length

483 amino acids

Sequence
(BLAST)

001: MDKAEEGQSS EPADSAAPAQ DDSVQTASGH NSRRPNLSLQ IPARTLDNQI GTSARINISP SPSSTRAGLP PRPNSTRTKS SLKSIIPQQS FRARSSAQEG
101: DRAILLVPGT PSEGQQDNTS TLRSFSFRKV INSLSAKRTH SLPVTPIATS DKTSSPANQI NNLPTTDDQD VQARIRRSLS VPGNRKNRSL RRADSLGVIR
201: VIPTTPRPIP VNTTASSDGI EETVDVPGDG GKDIPEEEAV CRICLVELNE GGETLKMECS CKGELALAHQ DCAVKWFSIK GNKICDVCKQ EVQNLPVTLL
301: RIPTQTANRR VTNGAHQRAS QQYRFWQDIP ILVMVSMLAY FCFLEQLLVT DLLSHALAIS LPFSCVLGLL SSMIASTMVT KSYLWAYASF QFAIVILFAH
401: IFYNVLKVNP VLAVLLSSFT GFGIAISANS MLVEYLRWRS RRNQQLAQTV DDGQRQEPGS NAVNENNGDR QQAQHRESGD NIV

Best Arabidopsis Sequence Match ( AT5G60580.3 )
(BLAST)

001: MATEEKPLNS LDLSHDDSSP ASNQAEGSSA ITEDTSANVQ QWRRKNLSLQ IPSRAAGLSP EDSVVIKMPP TPSPTPRRVN FALTSSSPGP TPTSSSVLPR
101: GKSSLKNLLP KAGCKPKTSN TDIEKGQGNA CSPPASQEKA SISRSLSLSK LFTPRIKRTS SLPVTPVILS NSESAHGGTS VAPQTPNRKG SVHIARSRSV
201: PLNDKELSLK GMDSFFRVIP STPRVKEGDV FSNASEAGNT ETGDADGEDI PEDEAVCRIC LVELCEGGET LKMECSCKGE LALAHKDCAL KWFTIKGNKT
301: CEVCKQEVKN LPVTLLRIQS LRNSGVPQLD VSGYRVWQEV PVLVIISMLA YFCFLEQLLV ENMGTGAIAI SLPFSCILGL LASMTASTMV MRRFVWIYAS
401: VQFALVVLFA HIFYSVVKLQ PVLSVLLSTF AGFGVCICGS SVMVEFVRWR RRWRARRLEQ QLNHALTLSQ PPQPLDPTTS LHHSNTS

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4K0E2]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.