Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr11P... | Banana | endoplasmic reticulum, plasma membrane, vacuole | 22.57 | 76.0 |
| Solyc07g044780.2.1 | Tomato | cytosol | 43.17 | 42.17 |
| TraesCS7D01G451000.1 | Wheat | cytosol, nucleus, plasma membrane | 38.42 | 40.0 |
| TraesCS7A01G463200.1 | Wheat | cytosol, nucleus, plasma membrane | 38.42 | 40.0 |
| TraesCS7B01G363900.1 | Wheat | cytosol, nucleus, plasma membrane | 36.44 | 38.1 |
| HORVU0Hr1G022270.4 | Barley | plastid | 38.02 | 35.1 |
| EER88810 | Sorghum | cytosol, nucleus, plasma membrane, plastid | 25.94 | 27.12 |
| Zm00001d014385_P001 | Maize | cytosol, nucleus, plasma membrane, plastid | 25.54 | 26.76 |
| Os06t0677300-01 | Rice | plasma membrane | 24.95 | 26.09 |
| Os02t0165000-01 | Rice | plasma membrane | 12.67 | 13.14 |
| VIT_12s0028g01200.t01 | Wine grape | cytosol, endoplasmic reticulum, peroxisome | 12.87 | 12.45 |
| KRH17646 | Soybean | cytosol, peroxisome, plasma membrane | 10.89 | 11.8 |
| KRH14034 | Soybean | plasma membrane | 10.49 | 10.11 |
| KRH74078 | Soybean | cytosol | 9.31 | 9.09 |
| CDY69891 | Canola | plasma membrane | 1.98 | 5.38 |
| GSMUA_Achr11P... | Banana | plasma membrane | 0.99 | 4.31 |
| GSMUA_Achr1P11310_001 | Banana | cytosol, nucleus, plasma membrane | 2.18 | 2.62 |
| GSMUA_Achr11P... | Banana | cytosol | 1.98 | 2.41 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, plastid | 2.38 | 0.35 |
Protein Annotations
| MapMan:19.2.2.1.5.3.4 | Gene3D:3.30.40.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0008270 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0046872 | EnsemblPlantsGene:GSMUA_Achr5G00540_001 | EnsemblPlants:GSMUA_Achr5P00540_001 | EnsemblPlants:GSMUA_Achr5T00540_001 |
| InterPro:IPR011016 | InterPro:IPR013083 | UniProt:M0SUI3 | InterPro:MARCH-like | PFAM:PF12906 | PFscan:PS51292 |
| PANTHER:PTHR23012 | PANTHER:PTHR23012:SF118 | SMART:SM00744 | SUPFAM:SSF57850 | TMHMM:TMhelix | UniParc:UPI000294BF76 |
| InterPro:Znf_RING-CH | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : | : |
Description
zinc finger, C3HC4 type, domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr5G00540_001]
Coordinates
chr5:+:313668..319079
Molecular Weight (calculated)
55527.0 Da
IEP (calculated)
8.700
GRAVY (calculated)
-0.378
Length
505 amino acids
Sequence
(BLAST)
(BLAST)
001: MENSAAPSDP SPEASPQGGR DRESSDQDGN IKGEISTAHH SRRPNLTTLQ IPARTLEIPL PSVRSNVLSS PGSVRAGLPP RPSSTRAKSS IRSLFPQRSL
101: KTKNSTPEGD RTVLLIPRTP SSEGPQEQAS TSRQFFITKV LPSTKALSSG STNRTHSLPV TPVANCGPSA VQERHAIDIS NLQKSNVQTQ IRRSFSVPGN
201: AKNGSLRRMD SIGLVRVISA TPRPVAVDNA IENDDIEAVN VTEDEGQDIP EEEAVCRICL VELAEGGETL KMECSCKGEL ALAHQECAIK WFSIKGNKTC
301: DVCKQEVRNL PVTLLRLQNR QTVNRRQPNA TQRQEAAPYR VWQDVPVLVM VSMLAYFCFL EQLLVTEMGS RALAISLPFS CVLGLLSSMI ASTMVSKSYI
401: WAYASFQFAI VILFAHIFYN VLRVSPVLSV LLSSFTGFGI AISTNASLVE YLRWRARRNL RSAQQQSDNR QQQESRNLPE VENGGNVRQH ESENQIQNPD
501: PSQQG
101: KTKNSTPEGD RTVLLIPRTP SSEGPQEQAS TSRQFFITKV LPSTKALSSG STNRTHSLPV TPVANCGPSA VQERHAIDIS NLQKSNVQTQ IRRSFSVPGN
201: AKNGSLRRMD SIGLVRVISA TPRPVAVDNA IENDDIEAVN VTEDEGQDIP EEEAVCRICL VELAEGGETL KMECSCKGEL ALAHQECAIK WFSIKGNKTC
301: DVCKQEVRNL PVTLLRLQNR QTVNRRQPNA TQRQEAAPYR VWQDVPVLVM VSMLAYFCFL EQLLVTEMGS RALAISLPFS CVLGLLSSMI ASTMVSKSYI
401: WAYASFQFAI VILFAHIFYN VLRVSPVLSV LLSSFTGFGI AISTNASLVE YLRWRARRNL RSAQQQSDNR QQQESRNLPE VENGGNVRQH ESENQIQNPD
501: PSQQG
001: MATEEKPLNS LDLSHDDSSP ASNQAEGSSA ITEDTSANVQ QWRRKNLSLQ IPSRAAGLSP EDSVVIKMPP TPSPTPRRVN FALTSSSPGP TPTSSSVLPR
101: GKSSLKNLLP KAGCKPKTSN TDIEKGQGNA CSPPASQEKA SISRSLSLSK LFTPRIKRTS SLPVTPVILS NSESAHGGTS VAPQTPNRKG SVHIARSRSV
201: PLNDKELSLK GMDSFFRVIP STPRVKEGDV FSNASEAGNT ETGDADGEDI PEDEAVCRIC LVELCEGGET LKMECSCKGE LALAHKDCAL KWFTIKGNKT
301: CEVCKQEVKN LPVTLLRIQS LRNSGVPQLD VSGYRVWQEV PVLVIISMLA YFCFLEQLLV ENMGTGAIAI SLPFSCILGL LASMTASTMV MRRFVWIYAS
401: VQFALVVLFA HIFYSVVKLQ PVLSVLLSTF AGFGVCICGS SVMVEFVRWR RRWRARRLEQ QLNHALTLSQ PPQPLDPTTS LHHSNTS
101: GKSSLKNLLP KAGCKPKTSN TDIEKGQGNA CSPPASQEKA SISRSLSLSK LFTPRIKRTS SLPVTPVILS NSESAHGGTS VAPQTPNRKG SVHIARSRSV
201: PLNDKELSLK GMDSFFRVIP STPRVKEGDV FSNASEAGNT ETGDADGEDI PEDEAVCRIC LVELCEGGET LKMECSCKGE LALAHKDCAL KWFTIKGNKT
301: CEVCKQEVKN LPVTLLRIQS LRNSGVPQLD VSGYRVWQEV PVLVIISMLA YFCFLEQLLV ENMGTGAIAI SLPFSCILGL LASMTASTMV MRRFVWIYAS
401: VQFALVVLFA HIFYSVVKLQ PVLSVLLSTF AGFGVCICGS SVMVEFVRWR RRWRARRLEQ QLNHALTLSQ PPQPLDPTTS LHHSNTS
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4K0E2]
SUBAcon: [peroxisome,nucleus,cytosol]
SUBAcon: [peroxisome,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.