Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- plasma membrane 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7A01G463200.1 | Wheat | cytosol, nucleus, plasma membrane | 89.9 | 89.9 |
| HORVU0Hr1G022270.4 | Barley | plastid | 93.2 | 82.63 |
| TraesCS7B01G363900.1 | Wheat | cytosol, nucleus, plasma membrane | 72.78 | 73.08 |
| GSMUA_Achr11P... | Banana | endoplasmic reticulum, plasma membrane, vacuole | 19.79 | 64.0 |
| GSMUA_Achr5P00540_001 | Banana | cytosol, nucleus, plasma membrane | 40.0 | 38.42 |
| EER88810 | Sorghum | cytosol, nucleus, plasma membrane, plastid | 30.93 | 31.06 |
| Zm00001d014385_P001 | Maize | cytosol, nucleus, plasma membrane, plastid | 30.52 | 30.71 |
| Solyc07g044780.2.1 | Tomato | cytosol | 31.55 | 29.59 |
| VIT_12s0028g01200.t01 | Wine grape | cytosol, endoplasmic reticulum, peroxisome | 16.29 | 15.13 |
| KRH17646 | Soybean | cytosol, peroxisome, plasma membrane | 12.37 | 12.88 |
| Os02t0165000-01 | Rice | plasma membrane | 10.31 | 10.27 |
| KRH74078 | Soybean | cytosol | 10.1 | 9.48 |
| KRH14034 | Soybean | plasma membrane | 9.69 | 8.97 |
| CDY69891 | Canola | plasma membrane | 2.27 | 5.91 |
| TraesCS2D01G037600.3 | Wheat | plasma membrane | 5.77 | 5.31 |
| TraesCS6D01G005100.1 | Wheat | plasma membrane | 4.95 | 5.14 |
Protein Annotations
| EnsemblPlants:TraesCS7D01G451000.1 | EnsemblPlantsGene:TraesCS7D01G451000 | Gene3D:3.30.40.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0008270 |
| InterPro:IPR011016 | InterPro:IPR013083 | InterPro:MARCH-like | InterPro:Znf_RING-CH | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR23012 |
| PANTHER:PTHR23012:SF118 | PFAM:PF12906 | PFscan:PS51292 | SEG:seg | SMART:SM00744 | SUPFAM:SSF57850 |
| TIGR:cd16495 | TMHMM:TMhelix | MapMan:19.2.2.1.5.3.4 | : | : | : |
Description
No Description!
Coordinates
chr7D:-:570663808..570667996
Molecular Weight (calculated)
52935.1 Da
IEP (calculated)
9.173
GRAVY (calculated)
-0.338
Length
485 amino acids
Sequence
(BLAST)
(BLAST)
001: MDRADGPPPP RSGDRAVQDQ DDTAQSAQGN NSRRPNLSLQ IPTRTLDNHL PTSTRINISA SPSSTRAGLP PRPNSARPKS SIKQQSFRLR SSAQEGDRTI
101: LLLPGTASEG SQDNTTQPGS FSFRKVINSL SAKHTYSLPV TPVGTSDKAS PPGIQIVDHP TTSKQEVQAQ IRRSLSVPGN RKNRSLRRAD SLGVIRVIPA
201: TPRPVPADTI APTDVIEETV DGPEDGGEDI PEEEAVCRIC FVELNEGGET LKMECSCKGE LALAHQDCAV KWFSIKGNKI CDVCRQEVKN LPVTLLRIPT
301: QTVTRRLANG AQQRAAQQYR FWQDIPILVM VSMLAYFCFL EQLLVTDLQS RALAISLPFS CVLGLLSSMI ASTMVTKSYL WAYASFQFAI VILFAHIFYN
401: VLRVNAVLAV LLSSFTGFGI AISTNSLLVE CMRWRSRRRS QRLAQGQPQP GNEGQHPGSG SNATSENSGD RQQQGQPPQS GVHIV
101: LLLPGTASEG SQDNTTQPGS FSFRKVINSL SAKHTYSLPV TPVGTSDKAS PPGIQIVDHP TTSKQEVQAQ IRRSLSVPGN RKNRSLRRAD SLGVIRVIPA
201: TPRPVPADTI APTDVIEETV DGPEDGGEDI PEEEAVCRIC FVELNEGGET LKMECSCKGE LALAHQDCAV KWFSIKGNKI CDVCRQEVKN LPVTLLRIPT
301: QTVTRRLANG AQQRAAQQYR FWQDIPILVM VSMLAYFCFL EQLLVTDLQS RALAISLPFS CVLGLLSSMI ASTMVTKSYL WAYASFQFAI VILFAHIFYN
401: VLRVNAVLAV LLSSFTGFGI AISTNSLLVE CMRWRSRRRS QRLAQGQPQP GNEGQHPGSG SNATSENSGD RQQQGQPPQS GVHIV
001: MATEEKPLNS LDLSHDDSSP ASNQAEGSSA ITEDTSANVQ QWRRKNLSLQ IPSRAAGLSP EDSVVIKMPP TPSPTPRRVN FALTSSSPGP TPTSSSVLPR
101: GKSSLKNLLP KAGCKPKTSN TDIEKGQGNA CSPPASQEKA SISRSLSLSK LFTPRIKRTS SLPVTPVILS NSESAHGGTS VAPQTPNRKG SVHIARSRSV
201: PLNDKELSLK GMDSFFRVIP STPRVKEGDV FSNASEAGNT ETGDADGEDI PEDEAVCRIC LVELCEGGET LKMECSCKGE LALAHKDCAL KWFTIKGNKT
301: CEVCKQEVKN LPVTLLRIQS LRNSGVPQLD VSGYRVWQEV PVLVIISMLA YFCFLEQLLV ENMGTGAIAI SLPFSCILGL LASMTASTMV MRRFVWIYAS
401: VQFALVVLFA HIFYSVVKLQ PVLSVLLSTF AGFGVCICGS SVMVEFVRWR RRWRARRLEQ QLNHALTLSQ PPQPLDPTTS LHHSNTS
101: GKSSLKNLLP KAGCKPKTSN TDIEKGQGNA CSPPASQEKA SISRSLSLSK LFTPRIKRTS SLPVTPVILS NSESAHGGTS VAPQTPNRKG SVHIARSRSV
201: PLNDKELSLK GMDSFFRVIP STPRVKEGDV FSNASEAGNT ETGDADGEDI PEDEAVCRIC LVELCEGGET LKMECSCKGE LALAHKDCAL KWFTIKGNKT
301: CEVCKQEVKN LPVTLLRIQS LRNSGVPQLD VSGYRVWQEV PVLVIISMLA YFCFLEQLLV ENMGTGAIAI SLPFSCILGL LASMTASTMV MRRFVWIYAS
401: VQFALVVLFA HIFYSVVKLQ PVLSVLLSTF AGFGVCICGS SVMVEFVRWR RRWRARRLEQ QLNHALTLSQ PPQPLDPTTS LHHSNTS
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4K0E2]
SUBAcon: [peroxisome,nucleus,cytosol]
SUBAcon: [peroxisome,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.