Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 4
- endoplasmic reticulum 5
- vacuole 4
- plasma membrane 5
- golgi 4
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY09194 | Canola | cytosol, peroxisome, plasma membrane | 66.14 | 70.56 |
| AT5G60580.4 | Thale cress | cytosol, nucleus, peroxisome | 59.69 | 61.74 |
| CDY31533 | Canola | cytosol, nucleus, plasma membrane | 55.97 | 57.43 |
| VIT_06s0004g02930.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 24.07 | 24.8 |
| KRH22901 | Soybean | cytosol | 19.96 | 21.56 |
| TraesCS2B01G051700.1 | Wheat | cytosol, peroxisome, plasma membrane | 9.39 | 9.72 |
| TraesCS2A01G039300.2 | Wheat | cytosol, peroxisome, plasma membrane | 9.0 | 9.09 |
| HORVU2Hr1G005630.19 | Barley | mitochondrion | 9.98 | 9.03 |
| CDY41589 | Canola | nucleus | 6.65 | 7.47 |
| CDY41588 | Canola | nucleus | 6.07 | 6.42 |
| CDY10383 | Canola | cytosol, mitochondrion, peroxisome, plasma membrane | 3.52 | 6.21 |
| CDY69891 | Canola | plasma membrane | 2.15 | 5.91 |
| CDY18852 | Canola | cytosol | 4.89 | 5.77 |
| CDY44728 | Canola | cytosol, nucleus, plasma membrane | 4.7 | 5.12 |
| CDY05254 | Canola | cytosol | 3.91 | 4.49 |
| CDY44346 | Canola | cytosol | 3.52 | 4.32 |
| CDY62901 | Canola | cytosol | 3.52 | 4.3 |
| CDX73994 | Canola | cytosol | 3.91 | 4.19 |
| CDY10402 | Canola | mitochondrion | 2.94 | 4.05 |
| CDY07939 | Canola | cytosol, nucleus, plasma membrane | 3.52 | 4.0 |
| CDX70311 | Canola | cytosol | 2.35 | 3.91 |
| CDY24702 | Canola | cytosol | 3.13 | 3.62 |
| CDX74109 | Canola | cytosol, peroxisome, plasma membrane | 2.74 | 3.2 |
| CDY08057 | Canola | cytosol, peroxisome, plasma membrane | 2.54 | 2.97 |
| CDY44727 | Canola | cytosol | 1.76 | 2.47 |
| CDY47182 | Canola | cytosol | 1.37 | 1.79 |
| CDY02603 | Canola | cytosol, peroxisome, plasma membrane | 1.17 | 1.55 |
Protein Annotations
| KEGG:00220+6.3.2.- | KEGG:00261+6.3.2.- | KEGG:00380+6.3.2.- | MapMan:19.2.2.1.5.3.4 | Gene3D:3.30.40.10 | GO:A0A078JPU4 |
| UniProt:A0A078JPU4 | EnsemblPlants:CDY67417 | ProteinID:CDY67417 | ProteinID:CDY67417.1 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0008270 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0046872 | EnsemblPlantsGene:GSBRNA2T00063519001 |
| InterPro:IPR011016 | InterPro:IPR013083 | InterPro:MARCH-like | PFAM:PF12906 | PFscan:PS51292 | PANTHER:PTHR23012 |
| PANTHER:PTHR23012:SF25 | SMART:SM00744 | SUPFAM:SSF57850 | SignalP:SignalP-noTM | TMHMM:TMhelix | UniPathway:UPA00143 |
| UniParc:UPI0004EE9BAD | InterPro:Znf_RING-CH | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : |
Description
BnaC09g53890DBnaC09g53890D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078JPU4]
Coordinates
chrLK036087:+:1..2868
Molecular Weight (calculated)
56182.1 Da
IEP (calculated)
8.790
GRAVY (calculated)
-0.014
Length
511 amino acids
Sequence
(BLAST)
(BLAST)
001: YVLLSLSLSL SIVPCVSKFL PFGRVLSKFW SFVFFMMDTE EKPLNPLDSS RGDSAPSDQA EERSSSAITE ETSANVQQWR RNNLSLQIPS RATNLSPEDS
101: VVIKMPPTPS PTPRRVNFSL TSISPGPAPP RTKSSLKNLI PKVGFKPKLS NTDVEKGQVD VSCQEKASIS RSLSLSKLFT PRIKRTSSLP VTPIVLLNSE
201: SARGGSSVAP QTPSSKGRVQ IARSRSVPVN DKEASLKGMD SFFRVIPSTP RVKEGGVLSN ASEAVNTETC EADGEDIPEE EAVCRICLVD LCEGGETLKM
301: ECSCKGELAL AHKDCALKWF TIKGNKTCEV CKQEVKNLPV TLLRIQSIRN SGVPQIDVTG YRVWQEVPVL VIISMLAYFC FLEQLLVEKM GTGAIAISLP
401: FSCILGLLAS MTASTMVMRR FVWIYASVQF ALVVLFAHVF YSVVELQPVL SVLLSTFAGF GVCICGSSVM VEFVRWKRRW RARRLEQQLN HAQTLPQTLD
501: ATTSQHHPNA S
101: VVIKMPPTPS PTPRRVNFSL TSISPGPAPP RTKSSLKNLI PKVGFKPKLS NTDVEKGQVD VSCQEKASIS RSLSLSKLFT PRIKRTSSLP VTPIVLLNSE
201: SARGGSSVAP QTPSSKGRVQ IARSRSVPVN DKEASLKGMD SFFRVIPSTP RVKEGGVLSN ASEAVNTETC EADGEDIPEE EAVCRICLVD LCEGGETLKM
301: ECSCKGELAL AHKDCALKWF TIKGNKTCEV CKQEVKNLPV TLLRIQSIRN SGVPQIDVTG YRVWQEVPVL VIISMLAYFC FLEQLLVEKM GTGAIAISLP
401: FSCILGLLAS MTASTMVMRR FVWIYASVQF ALVVLFAHVF YSVVELQPVL SVLLSTFAGF GVCICGSSVM VEFVRWKRRW RARRLEQQLN HAQTLPQTLD
501: ATTSQHHPNA S
001: MATEEKPLNS LDLSHDDSSP ASNQAEGSSA ITEDTSANVQ QWRRKNLSLQ IPSRAAGLSP EDSVVIKMPP TPSPTPRRVN FALTSSSPGP TPTSSSVLPR
101: GKSSLKNLLP KAGCKPKTSN TDIEKGQGNA CSPPASQEKA SISRSLSLSK LFTPRIKRTS SLPVTPVILS NSESAHGGTS VAPQTPNRKG SVHIARSRSV
201: PLNDKELSLK GMDSFFRVIP STPRVKEGDV FSNASEAGNT ETGDADGEDI PEDEAVCRIC LVELCEGGET LKMECSCKGE LALAHKDCAL KWFTIKGNKT
301: CEVCKQEVKN LPVTLLRIQS LRNSGVPQLD VSGYRVWQEV PVLVIISMLA YFCFLEQLLV ENMGTGAIAI SLPFSCILGL LASMTASTMV MRRFVWIYAS
401: VQFALVVLFA HIFYSVVKLQ PVLSVLLSTF AGFGVCICGS SVMVEFVRWR RRWRARRLEQ QLNHALTLSQ PPQPLDPTTS LHHSNTS
101: GKSSLKNLLP KAGCKPKTSN TDIEKGQGNA CSPPASQEKA SISRSLSLSK LFTPRIKRTS SLPVTPVILS NSESAHGGTS VAPQTPNRKG SVHIARSRSV
201: PLNDKELSLK GMDSFFRVIP STPRVKEGDV FSNASEAGNT ETGDADGEDI PEDEAVCRIC LVELCEGGET LKMECSCKGE LALAHKDCAL KWFTIKGNKT
301: CEVCKQEVKN LPVTLLRIQS LRNSGVPQLD VSGYRVWQEV PVLVIISMLA YFCFLEQLLV ENMGTGAIAI SLPFSCILGL LASMTASTMV MRRFVWIYAS
401: VQFALVVLFA HIFYSVVKLQ PVLSVLLSTF AGFGVCICGS SVMVEFVRWR RRWRARRLEQ QLNHALTLSQ PPQPLDPTTS LHHSNTS
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4K0E2]
SUBAcon: [peroxisome,nucleus,cytosol]
SUBAcon: [peroxisome,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.