CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra020758.1-P	Field mustard	cytosol	72.85	72.69
CDY05254	Canola	cytosol	42.31	42.02
CDY08057	Canola	cytosol, peroxisome, plasma membrane	40.5	40.96
CDX74109	Canola	cytosol, peroxisome, plasma membrane	40.05	40.5
CDY18852	Canola	cytosol	36.43	37.18
AT3G06330.1	Thale cress	cytosol	32.81	34.04
CDY02603	Canola	cytosol, peroxisome, plasma membrane	11.31	12.95
CDY47182	Canola	cytosol	8.14	9.21
CDY44727	Canola	cytosol	5.43	6.59
CDY41589	Canola	nucleus	4.98	4.84
CDY62901	Canola	cytosol	4.3	4.53
CDY44346	Canola	cytosol	4.07	4.32
CDY69891	Canola	plasma membrane	1.81	4.3
CDY44728	Canola	cytosol, nucleus, plasma membrane	4.52	4.26
PGSC0003DMT400004459	Potato	cytosol, nucleus, plasma membrane	4.75	4.07
CDY07939	Canola	cytosol, nucleus, plasma membrane	4.07	4.0
CDX70311	Canola	cytosol	2.71	3.91
Solyc09g007680.2.1	Tomato	cytosol, nucleus, plasma membrane	4.07	3.47
CDY41588	Canola	nucleus	3.62	3.31
HORVU6Hr1G001690.9	Barley	cytosol, nucleus	3.39	3.26
TraesCS6D01G005100.1	Wheat	plasma membrane	3.39	3.21
CDY67417	Canola	endoplasmic reticulum, plasma membrane	3.62	3.13
CDY31533	Canola	cytosol, nucleus, plasma membrane	3.39	3.01
TraesCS6A01G001000.1	Wheat	cytosol, nucleus, plasma membrane	2.94	2.95
CDY09194	Canola	cytosol, peroxisome, plasma membrane	3.17	2.92
CDX73994	Canola	cytosol	2.94	2.73
CDY10402	Canola	mitochondrion	2.26	2.7
KRG90054	Soybean	cytosol, peroxisome, vacuole	2.71	2.53
CDY10383	Canola	cytosol, mitochondrion, peroxisome, plasma membrane	1.58	2.41
VIT_12s0034g00630.t01	Wine grape	cytosol, nucleus	0.0	0.0

Protein Annotations

KEGG:00220+6.3.2.-	KEGG:00261+6.3.2.-	KEGG:00380+6.3.2.-	MapMan:19.2.2.1.5.3.4	Gene3D:3.30.40.10	GO:A0A078GHR3
UniProt:A0A078GHR3	EnsemblPlants:CDY24702	ProteinID:CDY24702	ProteinID:CDY24702.1	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0008270	GO:GO:0016020	GO:GO:0016021	GO:GO:0046872	EnsemblPlantsGene:GSBRNA2T00027088001
InterPro:IPR011016	InterPro:IPR013083	InterPro:MARCH-like	PFAM:PF12906	PFscan:PS51292	PANTHER:PTHR23012
PANTHER:PTHR23012:SF84	SMART:SM00744	SUPFAM:SSF57850	TMHMM:TMhelix	UniPathway:UPA00143	UniParc:UPI0004EE265A
InterPro:Znf_RING-CH	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

BnaA05g31010DBnaA05g31010D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GHR3]

Coordinates

chrLK032162:-:532565..535374

Molecular Weight (calculated)

48322.2 Da

IEP (calculated)

8.000

GRAVY (calculated)

-0.095

Length

442 amino acids

Sequence
(BLAST)

001: MMMKQEESAA EQPEIAIIVG DSSPPLSQVK EKSTEEDVQS CSQPSGTTHS DLSIQIPPRP IPFLGGGRIP KGSLKSTSSF KSGGTTSSPS PRGILRNLSL
101: KKKVVTHPES ERSSLLSPGL MEGAAKKANA AGSATSPYWQ RCLSLPSRQP AKLSPVVPAQ VSAAVPGEPP RKDSAHPPVP RSLSMPGRNK VIVRSISFDN
201: RKAHVASETS ADQISPVPTE ETEEEIPEEE AVCRICLDEC EEGNTLKMEC SCKGDLRLVH EACAIKWFST KGTRTCDVCR QEVKNLPVIL LRVPTTNQLN
301: SRRDRSNQQN MQSQTASAWQ EFVVLVLIST VCYFFFLEQL LIRDLNTQAI YIAGPFSLTL GLLASVFAIV LAIREYIWTY AALEFALVGM LVHLLYSTVR
401: LPAIYSILFA GILGFGIAVC LNSLYLNYFA WRARVAENSN PV

Best Arabidopsis Sequence Match ( AT3G06330.1 )
(BLAST)

001: MKMQDSAAQE PEIAIIVGDS SSSSLHSSSQ VTEKSTEDVP SCSHLDLSIQ IPSRSLPFGN GRNPKGSLKS TPSFKSGTTS SPRGILRNLS LKKKVISQPE
101: SERSSLLSPG LMETAKKPNA TGSTTSPYWK RCLSLPSRQA AKLSPVVSTQ LSAGVPGDPP NKDYSRSLSM PGRNKVIVRS ISFDNHKARV SSETSADQVS
201: SVPPEETDEE IPEEEAVCRI CLDVCEEGNT LKMECSCKGD LRLVHEACAM KWFSTKGTRT CDVCRQVVQN LPVTLVRVPT PNQQNNRRGS SQQNMPSQTV
301: SAWQEFVVLV LISTVCYFFF LEQLLIRDLN KQAIYIAAPF SLTLGLLASI FAIVLAIREY IWTYAALEFA LVGMLVHIFY ATVRLSATYS ILFAGILGFG
401: IAVCLNSLYL HYFAWRVRVA QNSSPV

Arabidopsis Description

AT3g06330/F24P17_21 [Source:UniProtKB/TrEMBL;Acc:Q9SQT6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.