CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 3
cytosol 1
plasma membrane 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH22901	Soybean	cytosol	58.68	56.45
KRH29926	Soybean	nucleus	23.52	20.46
KRH24873	Soybean	nucleus	22.64	20.04
PGSC0003DMT400020932	Potato	cytosol, peroxisome, plasma membrane	20.22	17.9
Solyc11g069350.1.1	Tomato	cytosol, nucleus, plasma membrane	20.44	17.78
KRH67679	Soybean	cytosol	8.57	8.9
KRG95972	Soybean	cytosol, nucleus, plasma membrane	8.35	8.44
KRH32447	Soybean	plasma membrane	5.71	5.35
KRH19853	Soybean	cytosol, peroxisome, plasma membrane	5.49	4.97
TraesCS6A01G001000.1	Wheat	cytosol, nucleus, plasma membrane	4.18	4.32
TraesCS6D01G005100.1	Wheat	plasma membrane	4.4	4.28
KRH20994	Soybean	cytosol	2.42	3.58
HORVU6Hr1G001690.9	Barley	cytosol, nucleus	3.52	3.48
KRH17646	Soybean	cytosol, peroxisome, plasma membrane	3.3	3.22
KRH74078	Soybean	cytosol	3.52	3.09
KRH11284	Soybean	cytosol	2.86	3.08
KRG90054	Soybean	cytosol, peroxisome, vacuole	3.08	2.95
KRH14034	Soybean	plasma membrane	3.08	2.67

Protein Annotations

MapMan:19.2.2.1.5.3.4	Gene3D:3.30.40.10	UniProt:A0A0R0H6X3	EMBL:ACUP02007714	EnsemblPlantsGene:GLYMA_12G173300	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0008270	GO:GO:0016020	GO:GO:0016021	GO:GO:0046872
InterPro:IPR011016	InterPro:IPR013083	EnsemblPlants:KRH26426	ProteinID:KRH26426	ProteinID:KRH26426.1	InterPro:MARCH-like
PFAM:PF12906	PFscan:PS51292	PANTHER:PTHR23012	PANTHER:PTHR23012:SF25	SMART:SM00744	SUPFAM:SSF57850
TMHMM:TMhelix	UniParc:UPI0006EDA315	InterPro:Znf_RING-CH	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

hypothetical protein

Coordinates

chr12:-:32990814..32996701

Molecular Weight (calculated)

50406.0 Da

IEP (calculated)

9.837

GRAVY (calculated)

-0.204

Length

455 amino acids

Sequence
(BLAST)

001: MSAHQKEKHN APSSKPTVSH SLHKRPNLQL EIPTRTSEES SQDLVRIRMP LTPSPTPSQK KVNFLATSRS VDAPRPTSSS TRAKSSMRNI LPKFGFRNRA
101: PSPDVEKVVT TAAQEGSFSG HQEKPSIPRS VSLTKMFTPK IKRTSSLPVE ELGRANVESV LCGTLGASPC GRETQGMIAR SRSVPVNTKE KGIRRMDSVF
201: RIIPSTPRVI EVNETTKDTE NGDDGEDIAE EEAVCRICLV DLCEGGETLK MECSCKGELA LAHQECAIKW FSIKGNKTCD VCKDEVRNLP VTLLWIRSVR
301: TQNTRARSEQ GDDFRAWQEL PVLVIVNMLA YFCFLEQLLV GRMRTKAIFI SLPFACALGL LSSVTSSTMV KSRFIWIYAS VQFVLVVIFA HIFYPLVGKH
401: AVLAILLATF AGFGVVMSGS SILLESSRWR RRWQALSELQ RGSSAMTQEG ISSQS

Best Arabidopsis Sequence Match ( AT5G60580.3 )
(BLAST)

001: MATEEKPLNS LDLSHDDSSP ASNQAEGSSA ITEDTSANVQ QWRRKNLSLQ IPSRAAGLSP EDSVVIKMPP TPSPTPRRVN FALTSSSPGP TPTSSSVLPR
101: GKSSLKNLLP KAGCKPKTSN TDIEKGQGNA CSPPASQEKA SISRSLSLSK LFTPRIKRTS SLPVTPVILS NSESAHGGTS VAPQTPNRKG SVHIARSRSV
201: PLNDKELSLK GMDSFFRVIP STPRVKEGDV FSNASEAGNT ETGDADGEDI PEDEAVCRIC LVELCEGGET LKMECSCKGE LALAHKDCAL KWFTIKGNKT
301: CEVCKQEVKN LPVTLLRIQS LRNSGVPQLD VSGYRVWQEV PVLVIISMLA YFCFLEQLLV ENMGTGAIAI SLPFSCILGL LASMTASTMV MRRFVWIYAS
401: VQFALVVLFA HIFYSVVKLQ PVLSVLLSTF AGFGVCICGS SVMVEFVRWR RRWRARRLEQ QLNHALTLSQ PPQPLDPTTS LHHSNTS

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4K0E2]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.