Factsheet for GSMUA_Achr4P28070_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_14s0108g01220.t01	Wine grape	nucleus	38.17	45.81
GSMUA_Achr3P12350_001	Banana	mitochondrion	14.52	41.86
Solyc02g067020.1.1	Tomato	nucleus	30.38	37.67
PGSC0003DMT400003403	Potato	nucleus	40.32	35.21
GSMUA_Achr4P28640_001	Banana	nucleus, plastid	23.92	33.71
PGSC0003DMT400064752	Potato	nucleus	33.6	33.33
Solyc02g088310.1.1	Tomato	nucleus	27.15	28.37
KRH42840	Soybean	plastid	6.45	16.0

Protein Annotations

MapMan:15.5.7.1	MapMan:26.9.1.7	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	ncoils:Coil
InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr4G28070_001
EnsemblPlants:GSMUA_Achr4P28070_001	EnsemblPlants:GSMUA_Achr4T28070_001	InterPro:IPR001471	InterPro:IPR036955	UniProt:M0SSR9	PFAM:PF00847
PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31194	PANTHER:PTHR31194:SF41	SMART:SM00380	SUPFAM:SSF54171
UniParc:UPI0002962ABA	SEG:seg	:	:	:	:

Description

Putative AP2 domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr4G28070_001]

Coordinates

chr4:-:26623650..26624855

Molecular Weight (calculated)

41178.6 Da

IEP (calculated)

4.468

GRAVY (calculated)

-0.665

Length

372 amino acids

Sequence
(BLAST)

001: MARKRRCTDG VDGKEDPDGG ATRWDEATAM EALGDVRRAR KRFVGVRQRP SGRWVAEIKD TIQKIRMWLG TFDTAEEAAR AYDEAACLLR GANTRTNFWP
101: CSSLQPSKPS VLPSKITNLL LMRLKARNHS ALVEMQQQQQ QPQLQQPGEE AHRPQYEDGA EEGDDIHFAD FLNDPSNSML HLSHADLGGA DYMHDSIQES
201: YTYKDGDHVD FTSDYELGGA VEFGGCGEDE ESLDVGVMDF GFMDEVQESS AAVKRMKYER KISASLYALN GISEYLKLQL GERRGGRMED HLSALTSACR
301: EQQQGYEMQL VEGEGVEVEA ENSSSSYSSS YITTICSSSS TSSSQSPPPS SALSSGSEGE LFFWSSLDLP PI

Best Arabidopsis Sequence Match ( AT5G19790.1 )
(BLAST)

001: MEHQTTPKQK TKEKSKGNKT KFVGVRQRPS GKWVAEIKDT TQKIRMWLGT FETAEEAARA YDEAACLLRG SNTRTNFANH FPNNSQLSLK IRNLLHQKQS
101: MKQQQQQQHK PVSSLTDCNI NYISTATSLT TTTTTTTTTA IPLNNVYRPD SSVIGQPETE GLQLPYSWPL VSGFNHQIPL AQAGGETHGH LNDHYSTDQH
201: LGLAEIERQI SASLYAMNGA NSYYDNMNAE YAIFDPTDPI WDLPSLSQLF CPT

Arabidopsis Description

RAP2-11Ethylene-responsive transcription factor RAP2-11 [Source:UniProtKB/Swiss-Prot;Acc:Q6J9S1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.